Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00996 ATGGGAAGTACTGAAAAGATCCCAATCAGCGCTGAAAGTTCAGAAACCACCATCGAGATAAAAATTAAAACATTGGATTCTCAAACTTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGTTATCTGAACGACAACGCTTAATTTGCCAAGGAAAAGTTCTAAAGGATGATCAGCTCCTGTCTGCCTATCATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCACCACCAGGAAGTGTGTCCAATCATTCAGTGACTGAACTGAATTCAAGCACAGGCCTTGGTCACGCAAGTCAAGTAGCCCCTGGTGTTTTTATTGAAACTTTCAATGTGCCTGTTCAGGGTGATGGAGTTGCTCCTGAAATCAATAGGATTGTTTCTGCTATTCTAGGATCTATTGGACTTCCAAATTTTGCGAGTGGCAGTGAAGGAGGGATTGATGTCAGGGAGCATGATTCCCAAGGCTCTGGAAGAACTTTGGGTTCTAGTGGAATATTAGATTCATCTCATCCTCGACCcgaacaagctggtttgcggattttgtctgatagatcgcgtaatacctttggaaccccagcgccagtatctctaggatctttgcagcctcctGTCATTCCTGATTCTTTGACAACTTTGTCCCAATACTTAAGGCATATAAGCCTTGAATTTGATGCAATTGTCAGAGAAGGGAGGGATAATGCCGAAGCAGCTGAGGCTCAAAGGAATGAAGAAACTAGATCTGTTTCTTCACATTTGGGTTCAACTCCAGAAGGGCTTTCATCACCCGCATCCTTGGCAGAAGTTTTACGTTCTACCAGACAAATGATTGATCAACAAGCCGGCGAATGCCTACTTCAACTATCAGGGCAGCTGGAGAATCAAGCAAATGTAACGGATCCCTTGTTGCGGTCAAGCATTCAGTCTAGGGCTTTGAGAACTGGAGTTTTGTTTTATAACCTTGGTGCCTTTTTGCTTGAGCTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACATCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGGGCAAGCTTTGGTGCTGTCCCTGTGGGAGCTGCACAGTCTAACTCAAGTTTAGGTAGTGGACTTGGTTCAAGCTTTTTCCCAAGGCGTATAGATATACAGATACGTCGAGGTACCTCAACAACCTCATCCAATACCAATCAAGAAGAACGCAATGAGACACAATCTGCCTCAGTACAAAGAAATTCAGGTGAAAGTTCTGTTAATCAGGCAACCTCTAGGCGTCCAGATGCATCCATTGCTGGGGAGCCAGGAGTAAGGTTAGTGCCAATTAGAACCATGGTTGCAGCAGCAGTGCCAGGCACCTTAGGGCGTCTGCCTTCAGAATCATCTGGTAATTCTATAGGGCTTTACTATCCAATTCTTGGGAGATTTCAACATGTTTCTTCTGGACATTCAAATAGTGAACAAGGATCTCAACAATCAAGTCAGCATCACACTGTGTTACCGTCGACTCCTGAATCCATATTGCAAAGGCAAAACACAGAAGATTCTGCCAGGAATGTAGGATCCTTATCAACTCCAAGCACAAGGCAAGAGCCTTCAAGTTCTCGTGTTGTAAATATCAATATTCTGGCTGCTAGTGGACCCCAAAACAACCAAGAATCTGAGAGACAAATACCAAGCAGTGTACTTCAGTTTTTAAGGACATTCTTTCCTGGTGGAGAAATTCACGTGGAAGATTCAAGTGTACAAGGAACAACTGCAGGTTCTGCCTTAGATCATGCTGCAACATCAAGGGGTGCTGCCCCAGTTCCTGAAGCACAACCTAATGTCAGTGAAGAAGGAATATTTTTGTCTAATATACTCCGTGAAATCATGCCAGTGATATCTCAACAAGTAGGGTCTGAGGGAAATCCTTCAGAAGATCATATGGCTCAAGATTCTTCAACCCAGGTTGAAACTGATGTCGGGACATCACGCAGACAGAGTGATTCTGATCCAAGCCCCCCAAATGCAAAACGTCAAAAGATGGAGTGA 2148 0.4246 MGSTEKIPISAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSVSNHSVTELNSSTGLGHASQVAPGVFIETFNVPVQGDGVAPEINRIVSAILGSIGLPNFASGSEGGIDVREHDSQGSGRTLGSSGILDSSHPRPEQAGLRILSDRSRNTFGTPAPVSLGSLQPPVIPDSLTTLSQYLRHISLEFDAIVREGRDNAEAAEAQRNEETRSVSSHLGSTPEGLSSPASLAEVLRSTRQMIDQQAGECLLQLSGQLENQANVTDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTSSEAVVNGGPAVFISPNGPNHIMVQPLPFQPGASFGAVPVGAAQSNSSLGSGLGSSFFPRRIDIQIRRGTSTTSSNTNQEERNETQSASVQRNSGESSVNQATSRRPDASIAGEPGVRLVPIRTMVAAAVPGTLGRLPSESSGNSIGLYYPILGRFQHVSSGHSNSEQGSQQSSQHHTVLPSTPESILQRQNTEDSARNVGSLSTPSTRQEPSSSRVVNINILAASGPQNNQESERQIPSSVLQFLRTFFPGGEIHVEDSSVQGTTAGSALDHAATSRGAAPVPEAQPNVSEEGIFLSNILREIMPVISQQVGSEGNPSEDHMAQDSSTQVETDVGTSRRQSDSDPSPPNAKRQKME 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00996 715 MobiDBLite consensus disorder prediction 265 281 - -
Gma17g00996 715 MobiDBLite consensus disorder prediction 253 281 - -
Gma17g00996 715 MobiDBLite consensus disorder prediction 424 473 - -
Gma17g00996 715 Gene3D - 10 109 - -
Gma17g00996 715 MobiDBLite consensus disorder prediction 669 715 - -
Gma17g00996 715 ProSiteProfiles Ubiquitin domain profile. 18 93 IPR000626 GO:0005515
Gma17g00996 715 MobiDBLite consensus disorder prediction 669 707 - -
Gma17g00996 715 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 4 715 - -
Gma17g00996 715 PRINTS Ubiquitin signature 28 48 IPR019956 -
Gma17g00996 715 PRINTS Ubiquitin signature 49 69 IPR019956 -
Gma17g00996 715 PRINTS Ubiquitin signature 70 91 IPR019956 -
Gma17g00996 715 MobiDBLite consensus disorder prediction 163 192 - -
Gma17g00996 715 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 4 715 - -
Gma17g00996 715 MobiDBLite consensus disorder prediction 174 188 - -
Gma17g00996 715 MobiDBLite consensus disorder prediction 424 465 - -
Gma17g00996 715 Pfam Ubiquitin family 20 90 IPR000626 GO:0005515
Gma17g00996 715 MobiDBLite consensus disorder prediction 621 646 - -
Gma17g00996 715 SMART ubq_7 18 89 IPR000626 GO:0005515
Gma17g00996 715 MobiDBLite consensus disorder prediction 518 573 - -
Gma17g00996 715 SUPERFAMILY Ubiquitin-like 13 98 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00996 Gma-Chr17 8482783 8493763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00996 18 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 8.47e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00996 K23390 - gmx:100783070 1327.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00996 17 8482783 8493763 Gma17g00996 17 8482783 8493763 ECH