Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00994 ATGTGTGTGCAAGATGGTGAACAAGCTGGTGAAGATCATATAGAGAAGAACGTTGATAACAGCATAAGAGTTTCATGGCCTTTGCATTGTGATCTCTTGAATGCCCACATGGATAACAAGGAAAAAGACTCTTCTTTTAGAACTCCCTCTGACCAGATCAGTGTTGCAAATTCATCTCCTCTGGAAAGCATATGTGAGGATGCAGAAATTGTGGACAAAAAACAAAACTTAATGAACTTTGTCCCTACTCTTCGGTCTGGAGAGTGGTCTGATATTGGAGATCGCACTTCCATGGAGGATACACATATATGCATCGGAGACTTGGCAGAAAAATTTGGCAATAACGAACTTTACAAGGAAGCTATTTCCTTTTATGGTGTATTTGACGGACATGGAGGGAAGAGCGCTGCACAATTCGTTCGTGATCATCTGCCACGGGTGATTGttgaggatgctgactttcctttggaattagagaaggttgtcacaaggtcatttttggagatcgatgcagagtttgcaagatcatgttctactgagtcttccctgtcttctggtacaactgcactgactgcaattaTATTAGGAAGGTCTTTACTTGTTGCCAATGCTGGAGACTGCCGTGCTGTATTGTCCCGTGGTGGAGGGGCTATAGAAATGTCCAAAGATCACAGGCCATTGTGCATTAAGGAAAGGAAGAGGATTGAGTCTCTAGGTGGATACATAGATGATGGTTACCTGAACGGGCAGTTAGGTGTGACTCGTGCACTAGGCAACTGGCATCTCCAAGGAATGAAGGAAATTAATGGAAAGGGTGGACCATTGAGTGCTGAGCCTGAACTTAAATTAATCACATTGACAAAAGAAGATGAATTCTTGATAATTGGGAGTGATGGGATCTGGGATGTTTTTCGCAGCCAAAATGCCGTAGACTTTGCTCGAAGGAGGCTTCAAGAGCACAATGATGTGAAGCAGTGTTGCAAGGAGGTGATAGGAGAAGCAATAAAGAGAGGAGCAACAGACAACTTGACAGTGGTGATGATATGTTTTCACTCAGAACCACCAGCTCCTATGGTTGTAGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGGCTTCAAAATCTTAAGTGCTTGCTAGAAGGATAA 1152 0.3837 MCVQDGEQAGEDHIEKNVDNSIRVSWPLHCDLLNAHMDNKEKDSSFRTPSDQISVANSSPLESICEDAEIVDKKQNLMNFVPTLRSGEWSDIGDRTSMEDTHICIGDLAEKFGNNELYKEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLEIDAEFARSCSTESSLSSGTTALTAIILGRSLLVANAGDCRAVLSRGGGAIEMSKDHRPLCIKERKRIESLGGYIDDGYLNGQLGVTRALGNWHLQGMKEINGKGGPLSAEPELKLITLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEVIGEAIKRGATDNLTVVMICFHSEPPAPMVVERPRVRRSISAEGLQNLKCLLEG 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00994 383 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Gma17g00994 383 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 371 - -
Gma17g00994 383 PANTHER PROTEIN PHOSPHATASE 2C 1 371 IPR015655 GO:0004722|GO:0006470
Gma17g00994 383 Pfam Protein phosphatase 2C 95 342 IPR001932 -
Gma17g00994 383 ProSiteProfiles PPM-type phosphatase domain profile. 85 350 IPR001932 -
Gma17g00994 383 SUPERFAMILY PP2C-like 76 352 IPR036457 -
Gma17g00994 383 SMART PP2C_4 75 348 IPR001932 -
Gma17g00994 383 CDD PP2Cc 85 350 IPR001932 -
Gma17g00994 383 Gene3D - 67 354 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00994 Gma-Chr17 8464347 8467668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00994 55 383 PP2C-type Phosphatase Gene Family AT2G25620 56.250 1.10e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Gma17g00994 PP2C 3.1e-67 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00994 K14803 - gmx:100820303 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00994 17 8464347 8467668 Gma17g00994 17 8464347 8467668 ECH
Gma17g00994 17 8464347 8467668 Gma13g01457 13 29314204 29317065 GST
Gma17g00994 17 8464347 8467668 Gma15g01910 15 25640746 25644492 PCT
Gma15g01910 15 25640746 25644492 Gma17g00994 17 8464347 8467668 PCT