Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00985 ATGGCTTTCCACGACCATCTCCAGCACGAAATAGCGTTCCAGCGTTTCACGGAGGAGCAAGAGTTGACCGAGAACAGAGACATGCAGCAGAGGCTCCCACCTCCGACATGGCTCAACAACGTTAACGCGCGTCAACAGAATTTCCTCGACACCGAGAAGAGCGTGGATCGGAACAACCGAAGCGAGAGCAATTGCGAATCCGAGGATTTGAGGGAATACAAAGCGGACATTCTAGGTCACCCTCTCTACGATCAACTGTTGTCGGCGCACGTCTCGTGCCTCAGAATCGCCACGCCGGTGGACCAGCTTCCTAGGATCGATGCGCAGCTTCAGCAGTCGCAGCGCGTGGTTGAAAAGTACTCTGCACTTGCACACAACGGGGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAACTGCAGCAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAATCTCTGCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTATACGAAGGAAGCCTTGATGGCGGCGAAACTCTTGGATTTGGTCCTCTTGTCCCCACTGAAAGTGAAAGATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGACGAGCGGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTACCCCACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGTAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGA 1038 0.4942 MAFHDHLQHEIAFQRFTEEQELTENRDMQQRLPPPTWLNNVNARQQNFLDTEKSVDRNNRSESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALAHNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGGETLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNSKSKRKSSAGEASNQSFM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00985 345 SUPERFAMILY Homeodomain-like 258 323 IPR009057 -
Gma17g00985 345 SMART HOX_1 258 323 IPR001356 GO:0003677
Gma17g00985 345 ProSiteProfiles ELK domain profile. 236 256 IPR005539 GO:0003677
Gma17g00985 345 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 23 338 - -
Gma17g00985 345 SMART KNOX1_2 71 115 IPR005540 GO:0003677|GO:0005634
Gma17g00985 345 MobiDBLite consensus disorder prediction 178 198 - -
Gma17g00985 345 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 23 338 - -
Gma17g00985 345 SMART ELK_2 236 257 IPR005539 GO:0003677
Gma17g00985 345 Pfam KNOX1 domain 73 114 IPR005540 GO:0003677|GO:0005634
Gma17g00985 345 Pfam ELK domain 236 257 IPR005539 GO:0003677
Gma17g00985 345 Pfam KNOX2 domain 129 178 IPR005541 GO:0003677|GO:0005634
Gma17g00985 345 SMART KNOX2_2 124 179 IPR005541 GO:0003677|GO:0005634
Gma17g00985 345 ProSiteProfiles 'Homeobox' domain profile. 256 319 IPR001356 GO:0003677
Gma17g00985 345 MobiDBLite consensus disorder prediction 313 345 - -
Gma17g00985 345 Pfam Homeobox KN domain 276 315 IPR008422 GO:0003677|GO:0006355
Gma17g00985 345 Gene3D - 262 340 - -
Gma17g00985 345 CDD homeodomain 259 319 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00985 Gma-Chr17 8406905 8415691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00985 73 342 Homeobox Transcription Factor Family AT5G11060 83.516 8.62e-166 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma17g00985 KNOX2 3.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00985 - - gmx:100781997 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00985 17 8406905 8415691 Gma17g00985 17 8406905 8415691 ECH
Gma17g00985 17 8406905 8415691 Gma13g01382 13 28516788 28526077 GST
Gma17g00985 17 8406905 8415691 Gma15g01920 15 26114477 26121224 PCT
Gma15g01920 15 26114477 26121224 Gma17g00985 17 8406905 8415691 PCT