Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00972 ATGACTCAACTGCAGGCACTCGACCTTGCCTTCAACAATTTGAGTGGATCTATACCCTCAAGCCTTGGAAACTTGAGCTCCCTCTTATGGTTGATGCTTGCAAACAATTCTTTAACTGGAGAAATCCCTCGAGAGTTGGGAAACTGTTCAAGCTTGTTATGGCTAAACCTTGCCAACAATAAGCTCTCTGGAAAGTTGCCTTCTGAACTGTCCAAAATTGGAAGGAATGCCACGACCACATTTGAATCGAATAGGCAAAACTATCGAATGGTTGCTGGATCTGGTGAATGCTTAGCAATGAGGAGATGGATACCTGCGGATTACCCTCCATTCAGCTTTGTGTACAGCCTCTTAACCAGGAAAACTTGTAGAGAGCTTTGGGACAAATTGCTCAAAGGATATGGTGTTTTCCAGATTTGCACACCTGGTGAAAGAATTCGCAGAACACAGATATCCGGGTATATTCAGCTAAGTTCGAACCAGCTCAGTGGTGAAATCCCTTCAGAAATTGGGACTATGGTGAACTTCAGCATGATGCACATGGGGTTTAACAACTTCTCTGGGAAGTTCCCTCCAGAGATTGCAAGTATTCCCATTGTGGTGCTAAACATCACAAGTAACCAGTTTTCAGGTGAAATCCCCGAAGAAATTGGCAACTTGAAGTGTTTGATGAATCTTGACTTGTCTTGCAACAACTTCTCTGGGACGTTTCCAACAAGTTTGAACAAATTGACAGAGCTTAACAAGTTCAACATCTCATACAACCCCTTAATATCCGGTGTGGTTCCATCAACAGGACAGTTTGCTACCTTTGAGAAAAATTCATATTTAGGCAACCCCTTTCTGATCCTTCCCGAGTTTATTGATAACGTTACCAACAATCAAAACAACACCTTTCCCAAAGCGCATAAAAAGTCCACAAGACTGTCTGTGTTTTTGGTGTGTATAGTTATAACACTGGTTTTGGCAGTATTCGGACTTCTTACAATCCTAGTCTGTGTATCGGTGAAAAGCCCTTCAGAGGAACCAAGATACCTCTTGAGGGATACAAAACAGTGGCATGATTCTAGCAGCTCCGGATCCTCATCATGGATGTCTGACACAGTTAAGGTTATCCGTTTGAACAAGACAGCTTTCACACATGCTGATATTCTCAAAGCAACTAGCAGCTTCTCAGAGGAAAGAATCATAGGAAAAGGAGGATTTGGAACAGTGTACAAGGGAGTGTTTTCAGATGGCAGACAAGTAGCAGTGAAGAAGCTTCAGAGGGAAGGCCTCGAAGGAGAAAAAGAATTCAAGGCTGAAATGGAGGTTCTGAGTGGTCATGGATTTGGCTGGCCTCATCCAAACCTGGTCACGCTCTACGGTTGGTGCCTAAATGGTTCAGAGAAGATACTGATTTATGAGTACATAGAAGGTGGAAGCTTGGAGGATTTAGTCACTGATAGAACACGTTTGACATGGAGGAGGAGGCTAGAAGTGGCAATTGATGTGGCACGTGCACTAGTCTATTTGCACCACGAGTGCTACCCTTCTGTTGTGCACAGAGATGTGAAGGCTAGCAATGTATTACTAGACAAAGATGGGAAGGCCAAGGTCACTGATTTTGGGCTTGCAAGAGTGGTTGATGTTGGGGACAGTCATGTGAGTACTATGGTGGCTGGGACAGTAGGCTATGTTGCACCAGAATATGGACACACATGGCAAGCTACTACAAAAGGGGATGTGTACAGTTTTGGGGTGTTGGTTATGGAGTTGGCAACAGCAAGAAGAGCAGTGGATGGAGGTGAAGAGTGTTTGGTGGAGTGGGCTAGGCGTGTTATGGGTTATGGACGACATCATCGCGGGTTGGGTCGTTCTGTTCCAGTTTTGCTAATGGGTTCTGGGCTTGTTGGTGGGGCTGAGGAGATGGGTGAGTTGCTAAGGATTGGGGTGATGTGTACTGCTGATTCACCACAGGCTAGACCCAACATGAAGGAGGTTCTTGCTATGCTGATTAAGATATCTAATCCCAAGGGGTACTCAAGTTATGGACACTACCTTGTTTAG 2049 0.447 MTQLQALDLAFNNLSGSIPSSLGNLSSLLWLMLANNSLTGEIPRELGNCSSLLWLNLANNKLSGKLPSELSKIGRNATTTFESNRQNYRMVAGSGECLAMRRWIPADYPPFSFVYSLLTRKTCRELWDKLLKGYGVFQICTPGERIRRTQISGYIQLSSNQLSGEIPSEIGTMVNFSMMHMGFNNFSGKFPPEIASIPIVVLNITSNQFSGEIPEEIGNLKCLMNLDLSCNNFSGTFPTSLNKLTELNKFNISYNPLISGVVPSTGQFATFEKNSYLGNPFLILPEFIDNVTNNQNNTFPKAHKKSTRLSVFLVCIVITLVLAVFGLLTILVCVSVKSPSEEPRYLLRDTKQWHDSSSSGSSSWMSDTVKVIRLNKTAFTHADILKATSSFSEERIIGKGGFGTVYKGVFSDGRQVAVKKLQREGLEGEKEFKAEMEVLSGHGFGWPHPNLVTLYGWCLNGSEKILIYEYIEGGSLEDLVTDRTRLTWRRRLEVAIDVARALVYLHHECYPSVVHRDVKASNVLLDKDGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGHTWQATTKGDVYSFGVLVMELATARRAVDGGEECLVEWARRVMGYGRHHRGLGRSVPVLLMGSGLVGGAEEMGELLRIGVMCTADSPQARPNMKEVLAMLIKISNPKGYSSYGHYLV 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00972 682 Gene3D Ribonuclease Inhibitor 146 291 IPR032675 -
Gma17g00972 682 Gene3D Ribonuclease Inhibitor 1 98 IPR032675 -
Gma17g00972 682 CDD STKc_IRAK 397 668 - -
Gma17g00972 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Gma17g00972 682 ProSitePatterns Protein kinases ATP-binding region signature. 397 420 IPR017441 GO:0005524
Gma17g00972 682 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 672 - -
Gma17g00972 682 Pfam Protein kinase domain 392 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00972 682 Gene3D Phosphorylase Kinase; domain 1 354 470 - -
Gma17g00972 682 SUPERFAMILY Protein kinase-like (PK-like) 373 667 IPR011009 -
Gma17g00972 682 ProSiteProfiles Protein kinase domain profile. 391 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00972 682 Gene3D Transferase(Phosphotransferase) domain 1 471 676 - -
Gma17g00972 682 SMART serkin_6 391 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00972 682 Pfam Leucine rich repeat 3 62 IPR001611 GO:0005515
Gma17g00972 682 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 672 - -
Gma17g00972 682 SUPERFAMILY L domain-like 2 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00972 Gma-Chr17 8290043 8292091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00972 2 676 Receptor kinase-like Gene Family AT4G39400 33.511 8.77e-109 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Gma17g00972 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00972 - - gmx:100816573 1320.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00972 17 8290043 8292091 Gma17g00972 17 8290043 8292091 ECH
Gma17g00972 17 8290043 8292091 Gma05g00232 05 2127415 2130839 GST