Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00968 ATGTCGGACGAAGAGCACCATTTCGAGTCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAGCAAGCCGGTACCATCCGCAAGAACGGCTACATCGTCATCAAAGGCCGCCCCTGCAAGGTTGTGGAAGTTTCGACTTCCAAAACTGGAAAGCACGGTCACGCTAAGTGTCACTTTGTTGGAATTGATATTTTCACTGCCAAGAAACTTGAGGATATTGTGCCCTCTTCTCACAACTGTGATGTTCCTCATGTGAATCGTACTGATTACCAGCTCATTGATATTGCTGAGGATGGATTTTTGAGTCTGCTTACTGAAAATGGTAACACTAAGGATGACCTCAAGCTTCCCACTGATGAGAGTCTGCTCACTCAGATAaaggatggatttgctgagggcaaggatcttgttgtgtctgtcatgtctgctatggAGGTGTTTGTGCAAAGGACTGTTTACAAGTTTAGTGTTACGCATGTGACGTTCACATTTATTGGTGGTGTTATGTGTCTTGTGTTCGTGGCAATGGAGGCAGGTTTAGGGAGGCACTTCAGAGGTATTATAGTCACATGTTGCCAAGCTATAAGTGTAAAGTGGGAAGGGATGAGTTCCTCTTCTCCACAACGTTCTCGTGGCGACGGCGAGAAAAGGCCCAGATTTTTCGACTCAAACGCGAAGGCCATCTGTTGGGGCAAGGCTGATACCGTCCCCGGCCGTCACCCTGAGAGGTGGCGCAAAGACGCCGCCGGTAACGTTGTCTGCAAGCGTTTCTTCAACTGCATCGGCTGCCTCTGCTACGAGTACGATCACATTATTCCCTTTTCCAAAGGTGGTGAGTCCACTGCAGATAATTGTCAAATACTTCAATCAAGAGTTAACAGATTCAAATCGGACAAATATAACATTGATTCGGAGCAATTGAAAGACTACTCTTGTGAGGTTAATTTTACTGATAAGGAGCTTGATATAATTGAGATGGCTGTTTATGGCGATGTGAAGCGGCCAGGAAACCAGTGTCGTTGCAGAACTATTGCTGAAAAGCTTGGCAAATTCAAACCAAAGGATGACACAGATGCATGTAAGTTGCCATAA 1095 0.4411 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFLSLLTENGNTKDDLKLPTDESLLTQIKDGFAEGKDLVVSVMSAMEVFVQRTVYKFSVTHVTFTFIGGVMCLVFVAMEAGLGRHFRGIIVTCCQAISVKWEGMSSSSPQRSRGDGEKRPRFFDSNAKAICWGKADTVPGRHPERWRKDAAGNVVCKRFFNCIGCLCYEYDHIIPFSKGGESTADNCQILQSRVNRFKSDKYNIDSEQLKDYSCEVNFTDKELDIIEMAVYGDVKRPGNQCRCRTIAEKLGKFKPKDDTDACKLP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00968 364 PANTHER BNAA07G09420D PROTEIN 1 145 - -
Gma17g00968 364 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gma17g00968 364 Gene3D - 1 85 IPR014722 -
Gma17g00968 364 TIGRFAM eIF_5A: translation elongation factor IF5A 17 145 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gma17g00968 364 SMART eIF_5a_2 85 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gma17g00968 364 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 146 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gma17g00968 364 Gene3D - 238 319 - -
Gma17g00968 364 CDD HNHc 256 295 IPR003615 -
Gma17g00968 364 Gene3D - 86 149 IPR012340 -
Gma17g00968 364 SUPERFAMILY Nucleic acid-binding proteins 86 146 IPR012340 -
Gma17g00968 364 MobiDBLite consensus disorder prediction 1 21 - -
Gma17g00968 364 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 145 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gma17g00968 364 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Gma17g00968 364 CDD S1_eIF5A 86 145 - -
Gma17g00968 364 SMART HNH_5 249 295 IPR003615 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00968 Gma-Chr17 8259345 8265130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00968 1 145 Eukaryotic Initiation Factors Gene Family AT1G13950 88.276 1.20e-90 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00968 K03263 - gmx:100775923 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00968 17 8259345 8265130 Gma05g00236 05 2149744 2151143 GST