Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma17g00968 | ATGTCGGACGAAGAGCACCATTTCGAGTCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCTCAGCAAGCCGGTACCATCCGCAAGAACGGCTACATCGTCATCAAAGGCCGCCCCTGCAAGGTTGTGGAAGTTTCGACTTCCAAAACTGGAAAGCACGGTCACGCTAAGTGTCACTTTGTTGGAATTGATATTTTCACTGCCAAGAAACTTGAGGATATTGTGCCCTCTTCTCACAACTGTGATGTTCCTCATGTGAATCGTACTGATTACCAGCTCATTGATATTGCTGAGGATGGATTTTTGAGTCTGCTTACTGAAAATGGTAACACTAAGGATGACCTCAAGCTTCCCACTGATGAGAGTCTGCTCACTCAGATAaaggatggatttgctgagggcaaggatcttgttgtgtctgtcatgtctgctatggAGGTGTTTGTGCAAAGGACTGTTTACAAGTTTAGTGTTACGCATGTGACGTTCACATTTATTGGTGGTGTTATGTGTCTTGTGTTCGTGGCAATGGAGGCAGGTTTAGGGAGGCACTTCAGAGGTATTATAGTCACATGTTGCCAAGCTATAAGTGTAAAGTGGGAAGGGATGAGTTCCTCTTCTCCACAACGTTCTCGTGGCGACGGCGAGAAAAGGCCCAGATTTTTCGACTCAAACGCGAAGGCCATCTGTTGGGGCAAGGCTGATACCGTCCCCGGCCGTCACCCTGAGAGGTGGCGCAAAGACGCCGCCGGTAACGTTGTCTGCAAGCGTTTCTTCAACTGCATCGGCTGCCTCTGCTACGAGTACGATCACATTATTCCCTTTTCCAAAGGTGGTGAGTCCACTGCAGATAATTGTCAAATACTTCAATCAAGAGTTAACAGATTCAAATCGGACAAATATAACATTGATTCGGAGCAATTGAAAGACTACTCTTGTGAGGTTAATTTTACTGATAAGGAGCTTGATATAATTGAGATGGCTGTTTATGGCGATGTGAAGCGGCCAGGAAACCAGTGTCGTTGCAGAACTATTGCTGAAAAGCTTGGCAAATTCAAACCAAAGGATGACACAGATGCATGTAAGTTGCCATAA | 1095 | 0.4411 | MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFLSLLTENGNTKDDLKLPTDESLLTQIKDGFAEGKDLVVSVMSAMEVFVQRTVYKFSVTHVTFTFIGGVMCLVFVAMEAGLGRHFRGIIVTCCQAISVKWEGMSSSSPQRSRGDGEKRPRFFDSNAKAICWGKADTVPGRHPERWRKDAAGNVVCKRFFNCIGCLCYEYDHIIPFSKGGESTADNCQILQSRVNRFKSDKYNIDSEQLKDYSCEVNFTDKELDIIEMAVYGDVKRPGNQCRCRTIAEKLGKFKPKDDTDACKLP | 364 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma17g00968 | 364 | PANTHER | BNAA07G09420D PROTEIN | 1 | 145 | - | - | |
Gma17g00968 | 364 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Gma17g00968 | 364 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Gma17g00968 | 364 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 17 | 145 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Gma17g00968 | 364 | SMART | eIF_5a_2 | 85 | 155 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Gma17g00968 | 364 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 146 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Gma17g00968 | 364 | Gene3D | - | 238 | 319 | - | - | |
Gma17g00968 | 364 | CDD | HNHc | 256 | 295 | IPR003615 | - | |
Gma17g00968 | 364 | Gene3D | - | 86 | 149 | IPR012340 | - | |
Gma17g00968 | 364 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 146 | IPR012340 | - | |
Gma17g00968 | 364 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Gma17g00968 | 364 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 145 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Gma17g00968 | 364 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
Gma17g00968 | 364 | CDD | S1_eIF5A | 86 | 145 | - | - | |
Gma17g00968 | 364 | SMART | HNH_5 | 249 | 295 | IPR003615 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma17g00968 | Gma-Chr17 | 8259345 | 8265130 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma17g00968 | 1 | 145 | Eukaryotic Initiation Factors Gene Family | AT1G13950 | 88.276 | 1.20e-90 | 267 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma17g00968 | K03263 | - | gmx:100775923 | 348.591 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma17g00968 | 17 | 8259345 | 8265130 | Gma05g00236 | 05 | 2149744 | 2151143 | GST |