Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00967 ATGGGGTGTGTTGTTGTGAAGCAGGCGGTGTCTGTGACGCCTGCGATTGAGCACTCGGTTGAATCGGAGAAGAACAACAGGAAGAAGAAGACTGAGTCAGTGGGGGCGAGTAGGAGCGAGTTGGGTGAGTCTGGGAGGGCGAGTTCCAATGGTGGAAGTGAGTCCCTGAGCTTCAGGTTGGGGAATCTGAGTAAGTACGTGGAGGGAGAGCAGGCGGCGGCGGGGTGGCCGGCGTGGCTCAGCGCCGTCGCGTGTGAGGCCATTCACGGTTGGGTGCCTCTTCGAGCTGACGCGTTTGAGAAACTTGATAAGattgggcagggtacatatagcagtgttttccgagcaaaggaagttgagaccgggaagatagtagctttgaagaaggtgaggtttgacaattttgagccagagagtgtgaggtttatggctcgagaaataatgattctgaggaggcttgatcatccaaacatcattaaactggagggcttgattacttctagattgtcttgtagcatatacctcgtgtttgagtacatggagcacgacatcacggggctcttggctagaccagaaatcaagtttagtgaatcacagatcaaatgctacatgaaacagttgttatctggtcttgagcattgtcactcgcggggtgtgatgcacagggacatcaaaggatcaaatcttttggtgaacaatgaagggatattgaaggtagcggattttggattggcaaatttctccaattctgggaacaagcagcccctcactagtcgtgttgtcaccttatggtaccgtcctccggaacttttgctcggttcaacagcttatggtccatccgtggatctctggagtgttggctgtgtatttgcagaattactaattgggaagcctatacttcaggggagaactgaggttgagcaattgcacaaaattttcaagctttgtggctccccacctgaagaatactggaaaaagaccagacttcctcatgcaacattgttcaagccacaacaaccatatgatagttccctccgagagacatttaaggattttcatgcatccactgtaaatcttctacaaactcttctttctgtcgaaccaagcaaacgtggaactgcctcttctgctctctcattggagtatttcaaaataaaaccttatgcatgtgaaccatcaagtttaccaatatacccgcctagcaaggagattgatgcgaaacatgaggaggaatcaAGAAGGAAAAAGATAGGTGGGCGAGCTTGCAAACCAGAATCAAGAAAACCATCAAGAAAGCCACTAGCACTCAGTAAATTAGCCCCAGCAGAGGATTTGACAAGTCAAACTCAAACTTCACATAAGATGAATGATAGATCTGTCCACATCATTAAACAAGAGGACACTAACACGTGTGAGGAGGCACCAAAGCAGTCTAGTGGTAAACCAGAAGATGCTTCTTCTTATATGAAGAATGCATCTCAAGTAGATATTCCCTTTCCTGGACCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCAAAAAGGCGTAGAGATGACACTTCAGTTAGATCCCACAGTCGGTCTATTTCTAGAGGATTTATCTTTAATTCATTAGAAACTTCTACACTAAATTCAAGGGATAATTCTGAATCCAGAAACCATGAAAATAAGGAATTTTTCGGGGCACGCACCAACTCTAGGGGCAATCACCTACTTGAAATTTCTAAGCTTGCCATGCAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTTGTGATGAGTACCATTCACAAGAACTGTCCCTGGCAATTTATAACAGGCAAGATTCGCTATCCAAGAGAAGTAACCTGAGTTACCAGGATCAAGAAGAAAAGGTAGAGTTTTCAGGGCCTCTGCTATCTCAAATGCACACAGTTGATGAACTCTTAGAAAGACACGAGCGTCATATCCGGCATACTGTCAGAAGATCATGGTTTCAGAGAGGTAAGAAGCAAGGGAAGTAA 2016 0.248 MGCVVVKQAVSVTPAIEHSVESEKNNRKKKTESVGASRSELGESGRASSNGGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVACEAIHGWVPLRADAFEKLDKIGQGTYSSVFRAKEVETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLARPEIKFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTAYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKTRLPHATLFKPQQPYDSSLRETFKDFHASTVNLLQTLLSVEPSKRGTASSALSLEYFKIKPYACEPSSLPIYPPSKEIDAKHEEESRRKKIGGRACKPESRKPSRKPLALSKLAPAEDLTSQTQTSHKMNDRSVHIIKQEDTNTCEEAPKQSSGKPEDASSYMKNASQVDIPFPGPLQVSKSSGFAWAKRRRDDTSVRSHSRSISRGFIFNSLETSTLNSRDNSESRNHENKEFFGARTNSRGNHLLEISKLAMQNQWSKFDRPDSFDTCDEYHSQELSLAIYNRQDSLSKRSNLSYQDQEEKVEFSGPLLSQMHTVDELLERHERHIRHTVRRSWFQRGKKQGK 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00967 671 MobiDBLite consensus disorder prediction 20 36 - -
Gma17g00967 671 SUPERFAMILY Protein kinase-like (PK-like) 92 384 IPR011009 -
Gma17g00967 671 MobiDBLite consensus disorder prediction 442 456 - -
Gma17g00967 671 MobiDBLite consensus disorder prediction 397 489 - -
Gma17g00967 671 Pfam Protein kinase domain 99 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00967 671 Gene3D Transferase(Phosphotransferase) domain 1 182 422 - -
Gma17g00967 671 MobiDBLite consensus disorder prediction 402 432 - -
Gma17g00967 671 ProSiteProfiles Protein kinase domain profile. 99 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00967 671 MobiDBLite consensus disorder prediction 472 489 - -
Gma17g00967 671 MobiDBLite consensus disorder prediction 17 54 - -
Gma17g00967 671 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 31 664 - -
Gma17g00967 671 CDD STKc_CDK9_like 99 383 - -
Gma17g00967 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gma17g00967 671 Gene3D Phosphorylase Kinase; domain 1 86 181 - -
Gma17g00967 671 PANTHER CELL DIVISION PROTEIN KINASE 31 664 - -
Gma17g00967 671 SMART serkin_6 99 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00967 671 MobiDBLite consensus disorder prediction 457 471 - -
Gma17g00967 671 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00967 Gma-Chr17 8245156 8251561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00967 91 443 Core Cell Cycle Gene Families AT5G10270 49.051 4.56e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma17g00967 Pkinase 7.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00967 - - gmx:100816047 1345.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00238 05 2162848 2167750 Gma17g00967 17 8245156 8251561 ECH
Gma17g00967 17 8245156 8251561 Gma17g00967 17 8245156 8251561 ECH
Gma17g00967 17 8245156 8251561 Gma05g00238 05 2162848 2167750 GST