Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00960 ATGGGTGAAGACCGATCCGAAATAGTGTTCTTCGATGTGGAGACCAGCGTTCCCACCCGAACGGGGCAGGGTTTTGCGCTTCTGGAATTCGGCGCCATTTTGGTTTGCCCCAAAACGCTCACGGAGCTTCGGAATTACTCTACTCTCGTTCGTCCCGCCAACCTCTCCGTCATCTCCCCCTTGTCGGAGCGCTGCAATGGCATCACCGCCGCCGCCGTCTCCGCCGCCCCTTCCTTCGCCGACATTGCTCACCTCGTTTACGACCTCCTTCACGGGAGGATTTGGGCGGGGCATAATATCATACGATTCGACTGTGTTCGGATTAGAGATGCCTTTGCTGAGATTAATCAGCCGCCGCCTGAACCTAAGGGAACCATTGACTCGCTGGTTTTGTTGACTCAAAAGTTTGGAAGAAGAGCTGGTGACATGAAGATGGCTACTCTTGCTACTTATTTTGGGCTTGGACGTCAGACACATAGGAGCTTGGATGATGTTCGGATGAATCTGGAAGTCCTCAAATACTGTGCAACAGTTCTATTCTTGGAGTCAAGTCTCCCAGATATATTCACTGCAAATAGTTGGGTTTCACCAAATTCTATTACAAGAAGCCGCAGTAATGAGAAGTCTCTATCGCAGGGGGGCTTATTAAATATTAATAAAGATTCTGTATTATCATCTCCTGCAACCGAATCCAAGGACAAAAATCATCCAATAATTTCTTTTGCATTGAGCAGCCTAAAAGGGAATGTCCCAAATATTGCAGATCCTAATATAGATCAATCGGATCCTTTTAACTTGAGCGCTCTTGAGGCTGAAATAAAAAGAGAATCCATTAAGTCAGATGCTGCCATGGAGGAAAAAACCATGCAAGAGTCACCTGATTTGGCTTCCTCATCTTCTGTATCTCAGCCTTGCAGCAGCTCTATTGCTGTTTTAGAACCTGATGGAATATGTATCCCTTTTATTGATGCATCTCTTGTTCCATCTTTCCTTGGCAGTCAAAGGATAGAATTACTGCATGAAGGTTTCCCGTTTCTGCTTCATTGTACTGATTTGAAAGTGCGGTTTGGAATAAACTCAAGGTTTTTTGATAGGGCTGGCCGGCCACGATTGAGTTTTGTGGTTGATCCATCACCAAGTCTATGTAATGTTCTTGATGCCTGTGACCGTGTAGCACAGAAGTTAAACATGGATTCTGGTAGCAGCTCTGATTGGAGGCCTGTTGTTATTAGGAAAGAAGGCTTCTTCAACTATCCTACTATCAGATTGCACATACCTACAGCTGTTGTGGCAGATGTTGATATTTATGCTACGGAAATATACCAAAGAGAATCATCTGGAACAGTGCAAAGACTTCTCTTCAGCAAGTTTGATGCTGCAGAACTTGTACAGGGAAGAGGGGTCACGATGGATGCTGAAACTGAGGCTGAGGAACTTATTAATTTGAACAATATATCAAGTAACTGTGGTGGGAATAATAGTAAGAGTGGCGATGGATTCATTGACAGAAGCAAAGTGAGGATTTTGTTGTGTGATAACGATTCCAAGAGTTCTGAAGAGGTTTTTACTCTTCTTTTGGGATGCTCTTATCAGGTTATTTCGGTAAGGTCAGCTAGGCAAGTGATTGATGCACTGAATGCGGAGGGGCAATACATAGACATGATACTAGCTGAAGTTGATCTTCCAATAAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTGTGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTGTCCATTGTTGTAAAGTGCTTGAGGCTTGGAGCGGCAGATTACCTAGTAAAGCCTTTACGCACAAATGAACTACTAAATTTGTGGACACACATGTGGAGAAGGAGGCGCATGCTTGGACTTGTAGAGAACAACATCTTGAATTATGACTTTGATCTGGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAAAGGGGCACTAATCCAGAGACAGGAGTATTAATCCAACAAGAACAAGAGGCTAGTATTGCCACCATTGCTGCTGTTGTGGTGGAGCTTCCCAGTTATCTTGTATCACAATATCAGCCTGATGTGCCTGGAATAAGTGATCGTCGAACAGGTACTCCAAGGCAGCATCCATCAAGCAGCAGAACTATTGATGGTAGACATTTTTCATCTGGTCCAAAGAAGAGTGAACTGAAGATTGGAGAGTCATCAGCCTTTTTCACCTATGTCAAAGCAAcaacattgaagagcaacattgaagagAGTGCTCATGTTGACAATAGTAACAATACTACTACTACTACTACTACTACAGAAGTTAGGATGGAAGATATGAATCAAGCATGTACTGAACAGGGGGATAATGGCCTTAAAACACACAAAAATGGAGAAATGTTTGGAAACCATTCTCAAGATGACTTACCGAGCAGCAATAGTATCCTCGATTCTTTCTCTATTGAGAGATCTTGTACTCCACCTGCATCGATGGAAGTTTCACAGCAAAAGCATTACAAGGAAGAACATTCTCAGGGAGTGGTGCATCCAAGAAATGGAAGTCACGGTTCTGTGCCTGCTCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCACGTTATGATGCCATCATCGGCACAATTGTATCAAAAGAATATCCAGGACCTGCAGATTCATGCTGGTTCTTCTATGATTGCACAGTACAATCATCTTCCCCAATGTCCTCCTCATGCGAATGGGATGACAAATTTCCCATATTATCCAATGAACATTTGCTTACAACCTGGTCAGATTTCTACTAATTCTTGGCCATCATTAGGAAGTTCAAGTTCATGTGAAGTACAAATAAGTAAAGTTGATAGGAGAGAGGCAGCATTGATGAAGTTTAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGGCTCGCTGAAAGGCGGCCTCGCGTGAGGGGACAGTTTGTCAGAAAGTTGAATGGTATTAATGTGGATCTTAATGGACAACCTGCTTCCACTGATTATGATGAAGATGATGAAGAGGAAGACAATCATAGGGCAAGAGATTCTTCTCCTGAGGTTGCTTGA 3150 0.4263 MGEDRSEIVFFDVETSVPTRTGQGFALLEFGAILVCPKTLTELRNYSTLVRPANLSVISPLSERCNGITAAAVSAAPSFADIAHLVYDLLHGRIWAGHNIIRFDCVRIRDAFAEINQPPPEPKGTIDSLVLLTQKFGRRAGDMKMATLATYFGLGRQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTANSWVSPNSITRSRSNEKSLSQGGLLNINKDSVLSSPATESKDKNHPIISFALSSLKGNVPNIADPNIDQSDPFNLSALEAEIKRESIKSDAAMEEKTMQESPDLASSSSVSQPCSSSIAVLEPDGICIPFIDASLVPSFLGSQRIELLHEGFPFLLHCTDLKVRFGINSRFFDRAGRPRLSFVVDPSPSLCNVLDACDRVAQKLNMDSGSSSDWRPVVIRKEGFFNYPTIRLHIPTAVVADVDIYATEIYQRESSGTVQRLLFSKFDAAELVQGRGVTMDAETEAEELINLNNISSNCGGNNSKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLGCSYQVISVRSARQVIDALNAEGQYIDMILAEVDLPIKKGMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYDFDLVASDPSDANTNSTTLFSDDTDDKSKRGTNPETGVLIQQEQEASIATIAAVVVELPSYLVSQYQPDVPGISDRRTGTPRQHPSSSRTIDGRHFSSGPKKSELKIGESSAFFTYVKATTLKSNIEESAHVDNSNNTTTTTTTTEVRMEDMNQACTEQGDNGLKTHKNGEMFGNHSQDDLPSSNSILDSFSIERSCTPPASMEVSQQKHYKEEHSQGVVHPRNGSHGSVPAQHAYPYYISGVVNHVMMPSSAQLYQKNIQDLQIHAGSSMIAQYNHLPQCPPHANGMTNFPYYPMNICLQPGQISTNSWPSLGSSSSCEVQISKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGINVDLNGQPASTDYDEDDEEEDNHRARDSSPEVA 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00960 1049 MobiDBLite consensus disorder prediction 656 675 - -
Gma17g00960 1049 Coils Coil 266 286 - -
Gma17g00960 1049 MobiDBLite consensus disorder prediction 708 744 - -
Gma17g00960 1049 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 471 1035 - -
Gma17g00960 1049 SUPERFAMILY Ribonuclease H-like 6 177 IPR012337 -
Gma17g00960 1049 SUPERFAMILY CheY-like 504 632 IPR011006 -
Gma17g00960 1049 SMART exoiiiendus 7 181 IPR013520 -
Gma17g00960 1049 Gene3D - 2 178 IPR036397 GO:0003676
Gma17g00960 1049 Gene3D - 506 706 - -
Gma17g00960 1049 PANTHER TWO-COMPONENT RESPONSE REGULATOR 471 1035 IPR045279 GO:0009736
Gma17g00960 1049 Pfam CCT motif 970 1012 IPR010402 GO:0005515
Gma17g00960 1049 ProSiteProfiles CCT domain profile. 970 1012 IPR010402 GO:0005515
Gma17g00960 1049 CDD DEDDh 9 173 - -
Gma17g00960 1049 Pfam Response regulator receiver domain 508 619 IPR001789 GO:0000160
Gma17g00960 1049 Pfam Exonuclease 9 172 IPR013520 -
Gma17g00960 1049 MobiDBLite consensus disorder prediction 1020 1049 - -
Gma17g00960 1049 ProSiteProfiles Response regulatory domain profile. 507 625 IPR001789 GO:0000160
Gma17g00960 1049 SMART REC_2 506 621 IPR001789 GO:0000160
Gma17g00960 1049 MobiDBLite consensus disorder prediction 280 301 - -
Gma17g00960 1049 MobiDBLite consensus disorder prediction 720 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00960 Gma-Chr17 8178542 8188632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00960 495 1047 Response Regulator Gene Family AT5G61380 50.949 2.77e-178 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gma17g00960 RNase_T 3e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00960 K12127 - gmx:100813917 1101.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00960 17 8178542 8188632 Gma17g00960 17 8178542 8188632 ECH