Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00954 ATGGAAAACGCTCCGGTGGTGTGTAAGGAAGATGATCAGATGGATTTGCCTCCCGGATTTCGGTTCCACCCGACTGATGAAGAGCTTATAAGCCATTACCTCTACAAGAAGGTCATTGACACCAAGTTCTGCGCCAGGGCTATTGGAGAAGTGGACCTCAACAAGTCTGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGAGAAAAGGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCCACTGGCTTGAGAACCAACAGGGCCACCGAAGCTGGGTACTGGAAGGCCACAGGAAAAGACAAAGAGATTTTCAGAGGAAAATCTTTGGTTGGAATGAAGAAAACTCTTGTTTTCTACAGAGGTCGAGCACCTAAAGGTGAAAAAAGCAATTGGGTCATGCACGAGTACAGACTCGAGGGGAAATTCTCTGTTCACAACCTCCCAAAAACTGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAAACTCATATCTCGGGGATAATGAGGTTGGACTCTTTTGCTGATGAATTGGGTTCTTCTGCTCTGCCACCTCTCTCGGATTCTTCGCCTTCTATCGGTAACACTAAACCTCTTAATGATACGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCAAGAAGGTGTCTTTGATTCCTTCACCAACTCTATCTATGCGGTTTCTTCAAATCCTATGGGCATTCTTCCCAGAATGCCACCTTCTGGCTCCTTCTACTCCACTCAAGGTGTTCAAGCTGCGCCTAATTTGGCATTTCCTGGTTCTGTTTACACCCTTCAGGATCACACCATCCTGAGAACCTTATGTGAAAACAATGGTTACAAGCCAGAGAGGGACATGATCAGTGTTTCGCAGGAAACGGGTCTAACTACTGATATCAACGCTGAAACCTCTTCAAATTTTGATATGGGTAGGAGGCCCTTTGAGAATCACAATCATGCATCTGTTTCTGTTGCCCCATTGGATCTTGATGGTTTGTGGAATTACTAA 1053 0.4549 MENAPVVCKEDDQMDLPPGFRFHPTDEELISHYLYKKVIDTKFCARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSFADELGSSALPPLSDSSPSIGNTKPLNDTAYVPCFSNPIDVQRNQEGVFDSFTNSIYAVSSNPMGILPRMPPSGSFYSTQGVQAAPNLAFPGSVYTLQDHTILRTLCENNGYKPERDMISVSQETGLTTDINAETSSNFDMGRRPFENHNHASVSVAPLDLDGLWNY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00954 350 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Gma17g00954 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 347 - -
Gma17g00954 350 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Gma17g00954 350 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Gma17g00954 350 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Gma17g00954 350 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 7 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00954 Gma-Chr17 8143518 8145189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00954 14 350 NAC Transcription Factor Family AT5G07680 57.101 7.54e-134 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma17g00954 NAM 2.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00954 - - gmx:100170719 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00251 05 2259020 2260912 Gma17g00954 17 8143518 8145189 ECH
Gma17g00954 17 8143518 8145189 Gma17g00954 17 8143518 8145189 ECH
Gma17g00954 17 8143518 8145189 Gma05g00251 05 2259020 2260912 GST