Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00953 ATGCCTTCTGCTTTTAATTTCCTCACAACTTCTCTGCTTCCCTTTCTCCCTCTCTATCGAGGAAACATGGTATTTTTgggtgttctcttggtggggtttctcttaggtgCTTATGGGGACAGTGATGGTTGGATGGATGCTCATGCTACCTTCTATGGAGGGGGCGATGCCTCTGGCACAATGGGTGGAGCTTGTGGATATGGAAACCTGTATAGCCAGGGCTACGGAACTAACACGGCTGCTTTGAGCACGGCCTTGTTCAACAATGGTTTGAGCTGTGGGGCTTGCTTTGAGATCAAGTGTGTCAATGACCAAAGGTGGTGCCTTCCAGACACAGTTGTGGTCACTGCCACCAATTTCTGTCCACCAAACAATGCCCTCCCAAATGATGCAGGTGGCTGGTGCAACCCTCCCCTTCAACATTTTGATCTCTCTCAGCCTGTCTTCCAACAAATAGCTCAATACAGAGCTGGCATAGTACCTGTGGCTTACAAAAGGGTCCCATGTCAAAAGAGAGGAGGCATCAGGTTCACCATCAATGGCCATTCTTACTTCAATCTAGTCCTAATCACCAATGTTGGTGGTGCTGGTGATGTTCAAGCAGTTTCAATCAAAGGTTCAAGGACTAATTGGCAACCAATGTCCAGAAACTGGGGTCAGAACTGGCAAAGCAACACTTACCTCAATGGACAAAGCCTCTCCTTTAAGGTTACCACTAGCGAGGGCCGCACCTTGGTCTCTAACAATGTTGCCCCTGATAGCTGGTCCTTTGGCCAGACCTTCACAGGGAAACAATTCAATTAA 804 0.4602 MPSAFNFLTTSLLPFLPLYRGNMVFLGVLLVGFLLGAYGDSDGWMDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDQRWCLPDTVVVTATNFCPPNNALPNDAGGWCNPPLQHFDLSQPVFQQIAQYRAGIVPVAYKRVPCQKRGGIRFTINGHSYFNLVLITNVGGAGDVQAVSIKGSRTNWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSEGRTLVSNNVAPDSWSFGQTFTGKQFN 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00953 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 263 IPR007117 -
Gma17g00953 267 SUPERFAMILY Barwin-like endoglucanases 32 192 IPR036908 -
Gma17g00953 267 PANTHER EXPANSIN-A15 25 267 IPR002963 GO:0009664
Gma17g00953 267 Pfam Lytic transglycolase 79 164 IPR009009 -
Gma17g00953 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 174 IPR007112 -
Gma17g00953 267 Pfam Expansin C-terminal domain 175 252 IPR007117 -
Gma17g00953 267 Gene3D - 174 266 IPR036749 -
Gma17g00953 267 SUPERFAMILY PHL pollen allergen 171 263 IPR036749 -
Gma17g00953 267 SMART dpbb_1 79 164 IPR007112 -
Gma17g00953 267 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576
Gma17g00953 267 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Gma17g00953 267 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Gma17g00953 267 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Gma17g00953 267 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Gma17g00953 267 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Gma17g00953 267 PANTHER EXPANSIN 25 267 - -
Gma17g00953 267 PRINTS Expansin signature 74 88 IPR002963 GO:0009664
Gma17g00953 267 PRINTS Expansin signature 101 112 IPR002963 GO:0009664
Gma17g00953 267 PRINTS Expansin signature 113 123 IPR002963 GO:0009664
Gma17g00953 267 PRINTS Expansin signature 132 149 IPR002963 GO:0009664
Gma17g00953 267 PRINTS Expansin signature 149 162 IPR002963 GO:0009664
Gma17g00953 267 PRINTS Expansin signature 173 185 IPR002963 GO:0009664
Gma17g00953 267 PRINTS Expansin signature 185 206 IPR002963 GO:0009664
Gma17g00953 267 PRINTS Expansin signature 220 241 IPR002963 GO:0009664
Gma17g00953 267 PRINTS Expansin signature 249 265 IPR002963 GO:0009664
Gma17g00953 267 Gene3D - 36 170 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00953 Gma-Chr17 8120474 8123768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00953 18 266 Expansin Gene Family AT2G03090 77.381 5.66e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00953 - K20628 gmx:100816718 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00216 19 2784944 2787319 Gma17g00953 17 8120474 8123768 ECH
Gma20g00327 20 4783736 4785890 Gma17g00953 17 8120474 8123768 ECH
Gma02g00998 02 10683705 10686005 Gma17g00953 17 8120474 8123768 ECH
Gma01g00461 01 5991245 5993454 Gma17g00953 17 8120474 8123768 ECH
Gma17g00953 17 8120474 8123768 Gma17g00953 17 8120474 8123768 ECH