Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00952 ATGGGAAGAGTTAAATTGAAGATCAAGAAATTAGAAAGCATAAGCAATCGGCATGTGACTTATTCAAAGCGAAAAAGTGGAATTATAAAAAAAGCAAAGGAATTATCAATACTGTGTGATATAGATATCATCCTTCTTATGTTTTCTCCAACAGGAAAGCCTACATTACTACAAGGAGAACGCAGCAATATTGAAGAGGTCATCGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAGAGCCTTGAAGCACTAAAGAAAACCTTTAAGAAGTTGGACCATGACGTAAAAATTCAAGATTTCTTAGGTTCAAGCAGTCAAACAATGGAGGAATTATCTCACCAAGTCAAGGTTTTACAAGCTCATATCACAGAAGTACAACAGAGACTGAGCTATTGGAATAATCTAGAGAAGATCAATAACTTAGAACATCTTAGACAAATGGAAGACTCACTACGGGAATCAATCAATCGAGTAAGCCTACAAAAAGAAAATTTAGGAAAGCACCAACTCATTTCACTGGAATGTGCTAACCAGTTGCAGGAAGGGATGACATTACCTTTGATGATGACAAGTTTACAAGAATCCCAACCTCTATCTTGGCTTTTGAATAATGATAATCATCAGTTGATGTTACCCAACGAACCAAAATTTCTATCCTTTAGTGATAATACCAATAGAGATGTTGAGTGCTCAACTGACATTTCACTCCCAAACTATTTTGGTCATATTGGGAGCAACAAACTTGAAGTTGGCAGTTCTCCCCAAGTCACTACTATGGGTCAAGGAGGTGGTACCATGAATGAGTTAAACGGAACTACTTACTTAAATGTACAACATTGTGACCAGTTTGCATACCCTCCTCCACCAGATATTGAGGAAGTGAAACATTTCCCTTCAATGGACAATAAATCGAACATTGTTGATTACCAAGTTAATAACAACTTTGATCTTCCCAGATCACTGTTTGAAAATGGACATCAATTTTGGAATTCTGCTTCTGGGTCATGTGGGATAGCCATGTATAATGAGAATGACTACCATAGGTAA 1065 0.3709 MGRVKLKIKKLESISNRHVTYSKRKSGIIKKAKELSILCDIDIILLMFSPTGKPTLLQGERSNIEEVIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTMEELSHQVKVLQAHITEVQQRLSYWNNLEKINNLEHLRQMEDSLRESINRVSLQKENLGKHQLISLECANQLQEGMTLPLMMTSLQESQPLSWLLNNDNHQLMLPNEPKFLSFSDNTNRDVECSTDISLPNYFGHIGSNKLEVGSSPQVTTMGQGGGTMNELNGTTYLNVQHCDQFAYPPPPDIEEVKHFPSMDNKSNIVDYQVNNNFDLPRSLFENGHQFWNSASGSCGIAMYNENDYHR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00952 354 Coils Coil 77 97 - -
Gma17g00952 354 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma17g00952 354 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma17g00952 354 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma17g00952 354 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 353 - -
Gma17g00952 354 Coils Coil 114 134 - -
Gma17g00952 354 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma17g00952 354 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Gma17g00952 354 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Gma17g00952 354 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Gma17g00952 354 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 353 - -
Gma17g00952 354 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gma17g00952 354 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00952 Gma-Chr17 8115682 8120207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00952 1 276 Type I MADS-box Gene Family AT2G03060 49.123 4.92e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma17g00952 SRF-TF 4.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00952 - - pvu:PHAVU_003G189100g 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00952 17 8115682 8120207 Gma17g00952 17 8115682 8120207 ECH
Gma17g00952 17 8115682 8120207 Gma05g00252 05 2285677 2290478 GST