Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00950 ATGCACGAAATTAGAGACCCTGCAATTCGGCTCTTCGGTCAGAAGATCCCTTTCCCTGAAGATGTTGACAAAGAAGAAGAGAGTGCTGAGGATAGAGAACAAGAGATGGAAGAACATGAAGACGAAGGAGACAAGGATACTAGAGTTGAAAATGTTACTAAGGAAGAGCTAGAAGCTGATCCTCCTCTAGATGCTGAAGAGACTAAGATTTCAGGCACATCCCCTGAGGCTATTGTGAACCCCAAAACACCTTCCATAGAAGAAGAAACAGCAAAATCAAAAGGTGGCAAATCAGAGAAGGAACAAGGCGATGCAGCCAACTCACAAGAGAAAACCCTGAAGAAGCCTGATAAAGTGCTACCATGCCCCCGCTGCAAAAGCATGGACACTAAATTCTGTTACTACAACAACTACAATGTCAACCAGCCGCGTTATTTCTGCAAAGCCTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCTGTGGGGGCAGGACGGCGAAAGAACAAGAACTCTACCTCGCATTATCGCCACATCACTATCTCCGAGGCCCTTCAAGCAGCAAGAATTGATGCTCAAAATGGAACTCATCTTCCAACTTTGAAAGGCAATGGTAGAGTCCTCAGCTTTGGATTAGATGCACATGCACCTATTTGTGATTCCATGGCATCTCTCATGAATCTTGGAGAGAAAAAGGCTCTTAATGGCACAAGAAATGGGTTTCATCATGGCTTTGAGGATCAAAGACTCCCCGTTCCTTGCAAAAGTGGGGAAAATGGTGATGACTCTTCAACTACATCCTCCATTACAATTTCAAGTCCCAAGGGAGAAAATAACAAAAGCACCTTCCAACAACAACCATTGCCCCAAAATCATGGTTTCCTTCCTCAAGTTCCATGCATTCCTGGTGTTCCTTGGCCCTATACATGGAATTCTCCAGTTCCTCCACCTGCTTTGTGTCCTTCAGGATTTCCCCTACCATTCTATCCTGCTACATTTTGGAATTGTGGCATGCCTGGGAATTGGAATGTTCCATGGTTTTCCTCAAGTTCACCTGCTTCAAACCTCAAGTCTCCAAGCTCCAGTCCCAATTCTCCAACTTTGGGGAAGCACTCGCGGGACAGTGACATGATTAAGCAAGACTCTTTGCACAAAGAAGAAGCTTCAACGCCAAGAAACGGGAGTGTTTTGGTCCCAAAAACGTTGAGAATTGATGATCCAAGTGAGGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCAGTGAGTGGGGGAGCTATGTTTAAGGCCTTCCAATCGAAGAAGGGTGAAAAGAATCATGTTGAAGCCTCTCCAATGTTGATGGCTAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAAAACTCCTGA 1416 0.4492 MHEIRDPAIRLFGQKIPFPEDVDKEEESAEDREQEMEEHEDEGDKDTRVENVTKEELEADPPLDAEETKISGTSPEAIVNPKTPSIEEETAKSKGGKSEKEQGDAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHITISEALQAARIDAQNGTHLPTLKGNGRVLSFGLDAHAPICDSMASLMNLGEKKALNGTRNGFHHGFEDQRLPVPCKSGENGDDSSTTSSITISSPKGENNKSTFQQQPLPQNHGFLPQVPCIPGVPWPYTWNSPVPPPALCPSGFPLPFYPATFWNCGMPGNWNVPWFSSSSPASNLKSPSSSPNSPTLGKHSRDSDMIKQDSLHKEEASTPRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNESVSGGAMFKAFQSKKGEKNHVEASPMLMANPAALSRSLNFHENS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00950 471 MobiDBLite consensus disorder prediction 41 65 - -
Gma17g00950 471 MobiDBLite consensus disorder prediction 247 294 - -
Gma17g00950 471 PANTHER CYCLIC DOF FACTOR 2 1 470 IPR045174 GO:0003700|GO:0006355
Gma17g00950 471 MobiDBLite consensus disorder prediction 261 294 - -
Gma17g00950 471 MobiDBLite consensus disorder prediction 356 374 - -
Gma17g00950 471 MobiDBLite consensus disorder prediction 87 117 - -
Gma17g00950 471 Pfam Dof domain, zinc finger 117 174 IPR003851 GO:0003677|GO:0006355
Gma17g00950 471 ProSiteProfiles Zinc finger Dof-type profile. 120 174 IPR003851 GO:0003677|GO:0006355
Gma17g00950 471 ProSitePatterns Zinc finger Dof-type signature. 122 158 IPR003851 GO:0003677|GO:0006355
Gma17g00950 471 PANTHER CYCLIC DOF FACTOR 1 1 470 - -
Gma17g00950 471 MobiDBLite consensus disorder prediction 1 117 - -
Gma17g00950 471 Coils Coil 22 42 - -
Gma17g00950 471 MobiDBLite consensus disorder prediction 375 391 - -
Gma17g00950 471 MobiDBLite consensus disorder prediction 356 404 - -
Gma17g00950 471 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00950 Gma-Chr17 8101698 8105003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00950 1 469 C2C2-Dof Transcription Factor Family AT3G47500 50.412 2.88e-127 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma17g00950 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00950 - - gmx:778113 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00253 05 2303134 2305993 Gma17g00950 17 8101698 8105003 ECH
Gma19g00205 19 2685498 2688716 Gma17g00950 17 8101698 8105003 ECH
Gma20g00335 20 4942519 4945787 Gma17g00950 17 8101698 8105003 ECH
Gma01g00454 01 5866252 5870143 Gma17g00950 17 8101698 8105003 ECH
Gma17g00950 17 8101698 8105003 Gma17g00950 17 8101698 8105003 ECH
Gma17g00950 17 8101698 8105003 Gma05g00253 05 2303134 2305993 GST
Gma01g00454 01 5866252 5870143 Gma17g00950 17 8101698 8105003 PCT
Gma02g00994 02 10614705 10617848 Gma17g00950 17 8101698 8105003 PCT