Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00945 atggagtctcagtcactcatgggttggagctctttctacgaaatagatgaaaaaccatttccatttacgtgccaattttcttacagCGGAAACAGTGAAGTGTATCCCTCACTGGATTGGCCTTACGGTTTTCCCATACAAGACTACTATCTTGATGCTGTTCCTCTTATGGATTATTACCCTTCAGATCCATTATATGAAACATTAACACTCGCTACTACTGAACCAACACAAAGCGTGCAAGACTATGACTTTTATGACATTAAAAAGGGTTTATCTGGCTGGAACGAAGTTGATGCTGTGTTTGATTCACAAAAAGTATTTTTGTTTGGCAACAACGAAGAAAGTGGTGGGATCGAGAAGCAAATGATGGAAGAAGATGGAAAAGTGAACAACCAAGGGAGAGAAGAGAGAATCAACAATAGCAGTTGCAGAACGTTATCAAGGAAGACCATATCTCAGTACTTCTACATGCCAATATCACAAGCAGCCACAGAACTCAATGTGGGCATAACACTTCTGAAGAAAAGGTGCAGAGAGGTGGGTATTCGAAGGTGGCCCCACAGGAAGCTCATGAGCTTGCAAACTCTGATAAACAACGTGCAGGAGCTAGGGAAAGAGGAGGGGGGAGAGAGTGAAGAGAAGTTAAGAAGTGCGATTGAGATATTGGAGAGGGAAAAGAAGGTATTGGAGGAAATGCCAGATACTGAACTCGAAGACACTACAAAGAGGCTTAGACAAGCGTGTTTCAAGGCCAACTACAAGAAGAGGAAGCTCACAGTCACAGGGCGGAGGAAGGAACCACGCTCTTCTTCTTCTTCTTCTTTGCATTGA 834 0.3897 MESQSLMGWSSFYEIDEKPFPFTCQFSYSGNSEVYPSLDWPYGFPIQDYYLDAVPLMDYYPSDPLYETLTLATTEPTQSVQDYDFYDIKKGLSGWNEVDAVFDSQKVFLFGNNEESGGIEKQMMEEDGKVNNQGREERINNSSCRTLSRKTISQYFYMPISQAATELNVGITLLKKRCREVGIRRWPHRKLMSLQTLINNVQELGKEEGGESEEKLRSAIEILEREKKVLEEMPDTELEDTTKRLRQACFKANYKKRKLTVTGRRKEPRSSSSSSLH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00945 277 ProSiteProfiles RWP-RK domain profile. 126 214 IPR003035 -
Gma17g00945 277 Coils Coil 213 233 - -
Gma17g00945 277 MobiDBLite consensus disorder prediction 257 277 - -
Gma17g00945 277 Pfam RWP-RK domain 147 194 IPR003035 -
Gma17g00945 277 PANTHER PROTEIN RKD4 34 274 IPR044607 GO:0003700
Gma17g00945 277 PANTHER PROTEIN RKD1-RELATED 34 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00945 Gma-Chr17 8076028 8077183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00945 142 258 AtRKD Transcription Factor Family AT1G18790 69.167 6.92e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gma17g00945 RWP-RK 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00945 - - gmx:100810700 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00945 17 8076028 8077183 Gma17g00945 17 8076028 8077183 ECH
Gma17g00945 17 8076028 8077183 Gma05g00258 05 2333014 2334273 GST
Gma17g00945 17 8076028 8077183 Gma04g01638 04 44610226 44611555 PCT