Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00941 ATGAAAAAGAGGCAGGTGGTGGTGAAACGAGATTACGCCACGTCATCACCAGCGGTGGGGAATATTCGATACGGGGAGTGCCAGAAGAATCATGCGGCGAATACGGGAGGTTATGCTGTGGATGGCTGCAGGGAATTCATGGCCAGTGCCTGTGAAGGAACAAATGCGGCGCTTACGTGTGCGGCTTGCGGCTGCCACAGGAACTTTCACAAGAGGGAAGTACTGCACGGCGTAAACTGA 240 0.5417 MKKRQVVVKRDYATSSPAVGNIRYGECQKNHAANTGGYAVDGCREFMASACEGTNAALTCAACGCHRNFHKREVLHGVN 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00941 79 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 75 - -
Gma17g00941 79 PANTHER BNAA09G44460D PROTEIN 4 75 - -
Gma17g00941 79 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 23 74 IPR006456 -
Gma17g00941 79 Pfam ZF-HD protein dimerisation region 22 74 IPR006456 -
Gma17g00941 79 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 73 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00941 Gma-Chr17 8048570 8049490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00941 1 74 Zinc finger-homeobox gene family AT1G18835 69.737 5.76e-30 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma17g00941 ZF-HD_dimer 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00941 - - gmx:100812995 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00941 17 8048570 8049490 Gma05g00262 05 2359068 2360007 GST