Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00940 ATGcataacatggggaggccaccttgctgtgacaaaattgggattaagaaaggaccttggactccagaagaagacattagcttggtgtcttacattcaagaacatggaccaggaaattggagagcagttcctaccaacacaggtttgatgagatgcagcaagagctgcaggcttagatggactaactatcttcgacctggtatcaaacggggtaatttcacggaacatgaagagaagatgataatccacctccaagccctattggggaacagATGGGCTGCAATAGCTTCATATCTTCCACAAAGGACAGACAACGACATAAAAAACTATTGGAACACCCATTTGAAGAAGAAGCTGAAACAAAGTGATCAAAGTGGGAGTGATGAAGGTGTTGACCACGAGGGACATTCTTCTTCTTCTTCTTCTAATTCACATCCAAAGGGTCAATGGGAGAGAAGACTTCAAACAGATATCCAAATGGCCAAGAAAGCCTTGTGTGATGCTTTGTCCCTTCACAAGCCAGCAACAGCAACAACAACAACCCTTGTTGTGCCTGATGATGCCACCAAACCTTCTTCAAGTTCTCATCATCAACCCTACAACCATGCATCATCCTCATATGCATCAAGCTACGAGAACATTTCACGATTGATGGAAAACTGGATGAAACCCCCAAACTCAACGAATAATTCACCAGGGTATTATTCTTCCTTCAGCAACATGGTCAATAATAATACTAGTACTACAGGATCCAGCTCTAGTGAGGGAGCACATAGCACCACTACCACTACAACACAAGATCAGGGTTTTGACTGCTTCTTGACCCTAAACTCCTCCAAACAGTACTATGGCTCTCCATCTCAGACGCAAGTGCCTCTTACTCTTCTGGAGAATTGGCTTTTTGATGATGGAGCTGCTCAGTGCCATGAAGATCTGATGAACATGTCCCTCGAAGAAAGTACCGCAGGTTTGTTTTAG 978 0.3139 MHNMGRPPCCDKIGIKKGPWTPEEDISLVSYIQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKQSDQSGSDEGVDHEGHSSSSSSNSHPKGQWERRLQTDIQMAKKALCDALSLHKPATATTTTLVVPDDATKPSSSSHHQPYNHASSSYASSYENISRLMENWMKPPNSTNNSPGYYSSFSNMVNNNTSTTGSSSSEGAHSTTTTTTQDQGFDCFLTLNSSKQYYGSPSQTQVPLTLLENWLFDDGAAQCHEDLMNMSLEESTAGLF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00940 325 Gene3D - 16 69 - -
Gma17g00940 325 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Gma17g00940 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Gma17g00940 325 MobiDBLite consensus disorder prediction 118 135 - -
Gma17g00940 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Gma17g00940 325 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Gma17g00940 325 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Gma17g00940 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 310 - -
Gma17g00940 325 CDD SANT 72 115 IPR001005 -
Gma17g00940 325 CDD SANT 19 64 IPR001005 -
Gma17g00940 325 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Gma17g00940 325 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Gma17g00940 325 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 4 310 - -
Gma17g00940 325 Gene3D - 72 149 - -
Gma17g00940 325 SMART sant 69 117 IPR001005 -
Gma17g00940 325 SMART sant 16 66 IPR001005 -
Gma17g00940 325 MobiDBLite consensus disorder prediction 182 207 - -
Gma17g00940 325 MobiDBLite consensus disorder prediction 118 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00940 Gma-Chr17 8024656 8026698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00940 4 325 MYB Transcription Factor Family AT5G62470 50.000 6.34e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma17g00940 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00940 K09422 - gmx:100812460 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00940 17 8024656 8026698 Gma17g00940 17 8024656 8026698 ECH
Gma17g00940 17 8024656 8026698 Gma05g00264 05 2380426 2381793 GST