Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00912 ATGGACGACGGCGATCCTTCCCTGTCCGATAAAGAGGAGGGGGAGAACGATGAGGAAGACACTCCGTTGTTGCGAGTTCCACTCGTCGATGCTCCTATACTCTTGTTCGTTTGCTTCCACAAGGCTTTTCGCTCCGAACTCGATCACCTTCGTCGCTTGGCGGAAACGGCGTCGTCGTTGGAGGACGAGCCGCGCCGTTGCCGACAAATAGTTCTTCAGCTTCAACGTAGGTTTCAGTTCCTCAAACTAGCTCATAAGTATCATTGTGCTGCGGAAGACGAGGTTATCTTCCTTGCACTGGATACACATGTGAAAAATGTAATCTGTACATATTCCCTTGAACATAGAAGCACGAATGGCCTTTTTGGTTCTGTTTTTCATTTCTTGGATGAGCTGATGGTTCCTAAAGAGAATATTTCCAAGCTGTTTCAAGAACTTGTGTACTGCATTGGCATCTTGCAAACCTCCATCTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCCCTGTTGATCCAGAAATTATCTAACAAAGAACAGGCCTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCTGCAAACAAACAATCAGAAGTTACCCAGTGTTTAAATGAAATTGCACCAATGGAAAAGGCAATGCAAGAGGTTTTGGTTTCTTGGCTTAGAAGCAGCAAACAAACCTGTACCGAGACCTGTTTTCAGAGTGGAGAATTTCAAGGTGTTGATGGATTCCTACATATAGAAAGATCACTAGAGCTGAGTTATTGTAATAGGAACTCCGAAGAAATTTCAAGTCCAATGAAAGTGAATGGCAAAGAAATAGAAGATGGAGCCAACCAGGTTAATGTCCTTCATCTTTGGCATAATGCCATCAAGAAAGATTTGAAAGATATTCTGGAAGAACTTCATCTGCTAAGAAAATCCAGCTGTTTTCAGAATTTAGACTCGATACTTATCCAACTAAAATTCTTTGCAGATGTCCTCATCTTCTACAGTGATGCTCAGAAGAAATTCTTTCATCCTGTACTGAATAAACATGCTTATGGTTGGTTGTCCAAGTCCATTGAACAATTTCTTGGTGAAAGTAACATTGAAGATATACAACAATTGCTATTCTATAACTCAGAAAGTGGAATACTTTTGAGCAAATTCATAGAGAAGCTTTGCCAAACACTTGAATCATTTGTATCAGGAGTCAACAAACAATTTGCTTTTCAAGAAAATGAGGTATTTCCTATCTTTAGAAAGAACTGCAGAAATGGAATGCAAGAGAGACTTCTAAGCTTGAGCCTATATATGATGCCTCTTGGGTTACTAAGATGTGTTATAACCTGGTTTTCAGTTCGCTTGTCTGAAAAAGAGTCTAGCTCCATTCTCTATTGCATAAAGAAAGGAAATAATTCTGTCTGTAAAGCTTTTTCATCACTGTTACATGAGTGGTTCCGCATTGGTTATTCAGGTAAAACCTCTATTGAAAAATTCAGACAAGAACTGCAACATATGTTTAAAAGAAGATGCTCTCTTTTACCCGAACAAATTAAGGAAGCTCATGAATTTTCTTTCTTAAATTCTGAGAAGCAGCCTCATAAAGTCTCTGGCCAGAATTGTTTGTCCTATTCCTCCTCCTCTGGATCCAATAATGTAAACAAGTATGAGACACCATACTCCACAGGAATTAATCTGCATATATTTTTTCCTTCCACAGTTGCGAAGTTACATCAGCATCCTACATTACATGCAGAAGAACGTTCTTCTATTTCTTTTCTTGATGATCCGAAACCAATTGACCTAATATTTTTCTTTCACAAAGCTATCAAGAAAGATTTGGAGTACCTAGTTCTTGGCTCAACTCAGTTAGAAAAAAATGATAAGTTGCTTATGGATTTCCATAAACGATTCCATCTCATATATTTTCTTCATCAAATCCATAGTGATGCAGAAGATGAGATAGTGTTTCCAGCCATGGAGGCAAGGGGTAAACTTAAAAACATTAGCCATGCTTATACCTTTGATCACAAACATGAAGTTGATCACTTCAATAAAATATCTCACATCCTTGATAAGATGTCTGGGTTACATCTTTCTGTTTCTACAATTGATCCAAATGTCAAGGAGAAGGGAATTCTAAGGTATCACCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGCATAAGTCACTTTCTGATCACATAAACCGTGAGGAAATAGAAATTTGGCCTATAATTAGAAAATTCTTCTCAAACCATGAGCAAGGGAGGATCATTGGATGCATGCTTGGAAGAATAAGAGCAGAGATATTGCAAGATATGATACCTTGGCTAATGGCATCTTTAACACAGGAAGAACAACATGTTTTGATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTGATGAATGGTTAGGTGAATGGTGGGATGGGTACAGTTTAACCAAGGTAACAGAGGGGTCAAATGTTGCCCCTCTCCAGCCTGTTGAGCCACTGGAGATTATATCCAAATATTTATCTGAAGAAATTCTGGATGAATTACAAGAAGAATCATCTGCCAACAAAAGCATAAATTTTTTGCAGAAGGATCATAATGGTGATAATGTTGTGCTGTCTAACTACAACTTTGATGATAAAGTTAAGGTTCATAATGCAGAACAAAATAATAATCAATGTTCGAAACTCACAAATCAATTTCATGATCATAACAAACATGCTTGCAATGAAGTAACAAATATCATAAATCCTGTAAACAATGAAGGTAAGTATTCTCAACTTTGTGACAAGTCTGGGCGTTATGACCGACTTTTGAAATTGAGTCAAGATGATTTGGAGACGGTGATAAGAAGGGTGTCTCGTGACTCTTGCTTGGATCCTCAGAAAAAGTCATACATAATACAGAACCTACTAATGAGTCGTTGGATTATTAGGCAGCAGATCTCTTCTACAGAAGCCAATATAAAAAATGATGAACTGGAATTTCCTGGGAAACATCCATCTTACAGGGACCCTCTCAAACTAATCTACGGTTGTAAACACTACAAGAGGAACTGTAAGCTTTTTGCTCCTTGTTGCAACCAACTTCATACCTGCATACATTGCCATAATGAGGAATCAGATCATTCAGTTGACAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTAGTGATTCAACCAATCAGTGCCACATGCTCAACAATTTCATGTAATTTATCGATGGCAAAATATTACTGCAGGATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCATTGTCCTTACTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGTATGAATTGCAATGCTTGTATGTCTCGTTCTCTTATGACACATACATGCAGGGAGAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCGGTAAAAGCCCTCCCATGTGGTCATGTAATGCACTCAACATGTTTTCAGGAATATACCTGCTTTAATTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTGTTGGCTGAAGAGAGAATTTCTGATGAGATTTCTAGTCAAACTCAGTTGCAGGTTTTATTATGTAATGATTGTGAAAAGAAAGGAGAGACCCCCTTCCACTGGCTCTACCACAAATGCCCTAGTTGTGGTTCCTACAACACTAGAGTTCTATGA 3795 0.3826 MDDGDPSLSDKEEGENDEEDTPLLRVPLVDAPILLFVCFHKAFRSELDHLRRLAETASSLEDEPRRCRQIVLQLQRRFQFLKLAHKYHCAAEDEVIFLALDTHVKNVICTYSLEHRSTNGLFGSVFHFLDELMVPKENISKLFQELVYCIGILQTSIYQHMLKEEEQVFPLLIQKLSNKEQASLVWQFICSVPIMLLEEVLPWMVSFLSANKQSEVTQCLNEIAPMEKAMQEVLVSWLRSSKQTCTETCFQSGEFQGVDGFLHIERSLELSYCNRNSEEISSPMKVNGKEIEDGANQVNVLHLWHNAIKKDLKDILEELHLLRKSSCFQNLDSILIQLKFFADVLIFYSDAQKKFFHPVLNKHAYGWLSKSIEQFLGESNIEDIQQLLFYNSESGILLSKFIEKLCQTLESFVSGVNKQFAFQENEVFPIFRKNCRNGMQERLLSLSLYMMPLGLLRCVITWFSVRLSEKESSSILYCIKKGNNSVCKAFSSLLHEWFRIGYSGKTSIEKFRQELQHMFKRRCSLLPEQIKEAHEFSFLNSEKQPHKVSGQNCLSYSSSSGSNNVNKYETPYSTGINLHIFFPSTVAKLHQHPTLHAEERSSISFLDDPKPIDLIFFFHKAIKKDLEYLVLGSTQLEKNDKLLMDFHKRFHLIYFLHQIHSDAEDEIVFPAMEARGKLKNISHAYTFDHKHEVDHFNKISHILDKMSGLHLSVSTIDPNVKEKGILRYHHLCRKLQEMCKSMHKSLSDHINREEIEIWPIIRKFFSNHEQGRIIGCMLGRIRAEILQDMIPWLMASLTQEEQHVLMFLWSMATKNTMFDEWLGEWWDGYSLTKVTEGSNVAPLQPVEPLEIISKYLSEEILDELQEESSANKSINFLQKDHNGDNVVLSNYNFDDKVKVHNAEQNNNQCSKLTNQFHDHNKHACNEVTNIINPVNNEGKYSQLCDKSGRYDRLLKLSQDDLETVIRRVSRDSCLDPQKKSYIIQNLLMSRWIIRQQISSTEANIKNDELEFPGKHPSYRDPLKLIYGCKHYKRNCKLFAPCCNQLHTCIHCHNEESDHSVDRKSITKMMCMKCLVIQPISATCSTISCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMTHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEERISDEISSQTQLQVLLCNDCEKKGETPFHWLYHKCPSCGSYNTRVL 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00912 1264 Pfam Hemerythrin HHE cation binding domain 40 172 IPR012312 -
Gma17g00912 1264 CDD Hr-like 39 170 - -
Gma17g00912 1264 SMART ring_2 1156 1197 IPR001841 -
Gma17g00912 1264 Gene3D - 1230 1264 - -
Gma17g00912 1264 SUPERFAMILY RING/U-box 1145 1202 - -
Gma17g00912 1264 SUPERFAMILY Zinc hairpin stack 1093 1148 IPR037275 -
Gma17g00912 1264 SUPERFAMILY CHY zinc finger-like 1019 1084 IPR037274 GO:0008270
Gma17g00912 1264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1149 1200 IPR013083 -
Gma17g00912 1264 Pfam Ring finger domain 1154 1197 IPR001841 -
Gma17g00912 1264 CDD RING-H2_Pirh2 1155 1198 - -
Gma17g00912 1264 ProSiteProfiles Zinc finger CHY-type profile. 1021 1090 IPR008913 GO:0008270
Gma17g00912 1264 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 1264 - -
Gma17g00912 1264 ProSiteProfiles Zinc finger RING-type profile. 1156 1198 IPR001841 -
Gma17g00912 1264 MobiDBLite consensus disorder prediction 1 21 - -
Gma17g00912 1264 CDD Hr-like 613 759 - -
Gma17g00912 1264 MobiDBLite consensus disorder prediction 1 17 - -
Gma17g00912 1264 Pfam CHY zinc finger 1028 1102 IPR008913 GO:0008270
Gma17g00912 1264 ProSiteProfiles Zinc finger CTCHY-type profile. 1092 1155 IPR017921 -
Gma17g00912 1264 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 24 1264 - -
Gma17g00912 1264 Pfam Zinc-ribbon 1203 1262 IPR039512 -
Gma17g00912 1264 Gene3D nmb1532 protein domain like 293 445 - -
Gma17g00912 1264 Gene3D nmb1532 protein domain like 607 778 - -
Gma17g00912 1264 Gene3D nmb1532 protein domain like 31 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00912 Gma-Chr17 7793356 7804012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00912 31 854 C2H2 Transcription Factor Family AT3G18290 32.131 4.82e-128 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00912 K16276 - gmx:100802706 2571.58