Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00894 ATGGAACCTCCTCTCATCAACGACTCCACATTCTCTTCCGCTAACCCTTCCTTGTCCGAGATTTGGCCCTCTCATTTTCCCACAGACCACACTCCCAGTAACAAGAGACACCTCTCCCCCTCGACTGATTGTGGCAGCAATAAACATATCAAATCATCAGGATCAGGATCCCAGGATCAAAACGGTGCCTTGAAGGCGGGTGAAGTGGACGCGACTTCAGTAGCCGGTAACAAGTTACCCGAACAAACGGCGAAACCTAGTTCTTCCGAGCagccacctaagcaagactatatacacgtgcgagctagaagaggccaagccaccgatagccacagtctcgctgagagagctaggagagaaaagatcagtgagaggatgaaaattcttcaagatatagttcccggctgcaacaagttcctttctatgaagcttgaggcagttaattcgagattgagcatgagccctactattgaatgttttccttcaaaagaagttggcactcagccatttgaccttgccggaataatatttggatcacaaccggccaggggatatgctcaaggatcacagccgggatggctgcatatgcagatagctggtggttttgagaaagcaacataa 621 0.2222 MEPPLINDSTFSSANPSLSEIWPSHFPTDHTPSNKRHLSPSTDCGSNKHIKSSGSGSQDQNGALKAGEVDATSVAGNKLPEQTAKPSSSEQPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDIVPGCNKFLSMKLEAVNSRLSMSPTIECFPSKEVGTQPFDLAGIIFGSQPARGYAQGSQPGWLHMQIAGGFEKAT 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00894 206 Pfam Helix-loop-helix DNA-binding domain 110 138 IPR011598 GO:0046983
Gma17g00894 206 PANTHER BNAC05G07950D PROTEIN 139 206 - -
Gma17g00894 206 MobiDBLite consensus disorder prediction 1 62 - -
Gma17g00894 206 MobiDBLite consensus disorder prediction 1 94 - -
Gma17g00894 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 141 IPR036638 GO:0046983
Gma17g00894 206 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 139 206 IPR024097 GO:0006355
Gma17g00894 206 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 43 138 IPR024097 GO:0006355
Gma17g00894 206 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 167 IPR011598 GO:0046983
Gma17g00894 206 MobiDBLite consensus disorder prediction 76 94 - -
Gma17g00894 206 Gene3D - 96 153 IPR036638 GO:0046983
Gma17g00894 206 PANTHER BNAC05G07950D PROTEIN 43 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00894 Gma-Chr17 7593910 7597190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00894 1 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 38.889 7.41e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g00894 HLH 0.00015 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00894 - - gmx:100799646 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00307 05 2810342 2814053 Gma17g00894 17 7593910 7597190 ECH
Gma17g00894 17 7593910 7597190 Gma17g00894 17 7593910 7597190 ECH