Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00889 ATGTCTCGCGCCTCCTCCGCCGCAGATTCCGCCGCCTCCGGTGAGATCATACTGTTCGGAGTCAGAGTCGTCGTCGATTCCATGAGGAAGAGCGTCAGCATGAGCAACCTCTCACAGTACGAGCATCCTCAAGACGGCAGCAACAACAAAGACGCTCTCGCCGCCGGTTACGCCTCCGCCGACGACGCCGCTCCTCAGAACTCCGGCCGCCTCCGGGAGCGCGAGCGAAAGCGAGGAGTTCCGTGGACGGAGGAAGAGCACAAGCTGTTTTTGGTTGGATTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTACGTCAAAACGCGAACGCCAACGCAGGTTGCGAGCCATGCTCAGAAGTACTTTCTCCGACGAAGCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGACACGGTCTCTGCAATTCCAATGGAGGGAGAACAGGTCCAGAATCAAGACACGCTGTCTCATTCACAACAACAATCACCCTTGTTTCCTGCTGAAACTAGCAAAATCAATGGGTTTCCAATGATGCCAGTGTATCAGTTTGGGTTTGGTTCTTCTGGAGTGATTTCAGTCCAAGGTGGCAATGGAAACCCAATGGAAGAACTCACTCTGGGACAAGGAAACGTGGAAAAACATAATGTGCCAAACAAGGTCTCTACAGTGTCTGATATCATCACCCCGAGTTCTTCTAGTTCTGCCGTTGACCCACCGACACTGTCCCTGGGGCTATCCTTTTCATCTGACCAAAGACAGACATCATCAAGACATTCAGCTTTACATGCCATACAATGTTTCAGCAATGGAGAAAGCATCATTAGTGTTGCTTGA 864 0.5162 MSRASSAADSAASGEIILFGVRVVVDSMRKSVSMSNLSQYEHPQDGSNNKDALAAGYASADDAAPQNSGRLRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEGEQVQNQDTLSHSQQQSPLFPAETSKINGFPMMPVYQFGFGSSGVISVQGGNGNPMEELTLGQGNVEKHNVPNKVSTVSDIITPSSSSSAVDPPTLSLGLSFSSDQRQTSSRHSALHAIQCFSNGESIISVA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00889 287 PANTHER KIN2 13 287 - -
Gma17g00889 287 SMART sant 78 128 IPR001005 -
Gma17g00889 287 ProSiteProfiles Myb-like domain profile. 74 126 IPR001005 -
Gma17g00889 287 SUPERFAMILY Homeodomain-like 76 131 IPR009057 -
Gma17g00889 287 MobiDBLite consensus disorder prediction 59 79 - -
Gma17g00889 287 Pfam Myb-like DNA-binding domain 81 126 IPR001005 -
Gma17g00889 287 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 13 287 - -
Gma17g00889 287 Gene3D - 80 132 - -
Gma17g00889 287 CDD SANT 81 126 IPR001005 -
Gma17g00889 287 ProSiteProfiles SANT domain profile. 77 130 IPR017884 -
Gma17g00889 287 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 77 128 IPR006447 GO:0003677
Gma17g00889 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 130 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00889 Gma-Chr17 7549453 7551625 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma17g00889 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00889 - - gmx:780536 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00889 17 7549453 7551625 Gma05g00311 05 2852623 2854864 GST
Gma17g00889 17 7549453 7551625 Gma04g01717 04 46379308 46381978 PCT
Gma17g00889 17 7549453 7551625 Gma06g01677 06 16777822 16780733 PCT
Gma04g01717 04 46379308 46381978 Gma17g00889 17 7549453 7551625 PCT
Gma06g01677 06 16777822 16780733 Gma17g00889 17 7549453 7551625 PCT