Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00880 ATGGCTTCTTCAGATCCCATCTCTTCTCGCCACTACACTTACAACAGAAAACAAAAATCTCTAGGCCTTCTCTGCACTAATTTCTTGAGCTTGTACAACCGAGACACCGTTCACTTGATTGGCCTAGACGATGCTGCCACCCGATTAGGTGTTGAGAGACGGCGGATCTATGACATTGTGAATGTCCTGGAGAGTATCGGGGTACTCTCAAGGAAAGCAAAAAATCAATACACATGGAGAGGGTTTGCCGCAATCCCTCTCACTCTACAGGATCTCAAGGAAGAGGGGTTGAAGGAGAATTCTAATTCCCTACGTGGGCCTGGAAACCATGATAAAGTTTCCGACGACGAAGATGACGAGGAAACACAGTCCAATCCCGCCGCTACTGGAAGTCAAAGTGACAAGTTGAACCCTAATTCTACTCTTCCTAAACCTCTGAAAAATGAAAATCGAAGAGAAAAATCTCTGGCTCTGCTTACCCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATGTGGAATTGATCTCCCTTGACGAGGCTGCAAAATTGCTACTTGGGGATGCCCATAATACGTCTGTAATGAGAACTAAAGTTAGACGCCTATATGACATCGCAAATGTGCTATCCTCCATGAACCTTATTGAGAAGACCCATACAATGGATACACGAAAACCAGCATTCAGGTGGCTCGGTTCTGAAGGGAAGACATGGGATGAGACACTTCACAAATCAAACCTAAACGACTCTAGGAAAAGGGCGTTTGGAAGTGATATCACTAACATCAGTTTTGAGAGGAATAAAGTGGAATTGTTCACGAGTGGGGACTTGAATCCGAATCCTAAGAAGCCAAGAATGGAAAATGGTAGTGGGCTGGGTGAGGCAGACGAAAACAATTTAAAACAAGGCATAAAACAAGCTTCAAAGAGCTATGAATTTGGTCCTTTCGCTCCAGCTTGCGTGCCCAAAGTTGGAGCCTCTCAGAATAATAATATGAAGCAGGTGCATGACTGGGGCAGTCTTGCAACTGCACATAGCCCTCAGTATCAAAATGAAGCCTTGAGAGAACTCTTCTCCCATTACATGGAAGCATGGAAATTGTGGTACTCAGAAATTGCTAGGAAGAGGCCATTACAAATTTTGTAA 1143 0.4409 MASSDPISSRHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWRGFAAIPLTLQDLKEEGLKENSNSLRGPGNHDKVSDDEDDEETQSNPAATGSQSDKLNPNSTLPKPLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTMDTRKPAFRWLGSEGKTWDETLHKSNLNDSRKRAFGSDITNISFERNKVELFTSGDLNPNPKKPRMENGSGLGEADENNLKQGIKQASKSYEFGPFAPACVPKVGASQNNNMKQVHDWGSLATAHSPQYQNEALRELFSHYMEAWKLWYSEIARKRPLQIL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00880 380 MobiDBLite consensus disorder prediction 272 296 - -
Gma17g00880 380 PANTHER TRANSCRIPTION FACTOR E2F 8 368 IPR015633 GO:0000978|GO:0006357
Gma17g00880 380 SUPERFAMILY "Winged helix" DNA-binding domain 153 232 IPR036390 -
Gma17g00880 380 SMART E2F_TDP_2 151 231 IPR003316 GO:0005667|GO:0006355
Gma17g00880 380 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Gma17g00880 380 MobiDBLite consensus disorder prediction 99 149 - -
Gma17g00880 380 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 8 368 - -
Gma17g00880 380 MobiDBLite consensus disorder prediction 124 145 - -
Gma17g00880 380 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Gma17g00880 380 Pfam E2F/DP family winged-helix DNA-binding domain 153 231 IPR003316 GO:0005667|GO:0006355
Gma17g00880 380 Gene3D - 145 233 IPR036388 -
Gma17g00880 380 Gene3D - 11 83 IPR036388 -
Gma17g00880 380 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00880 Gma-Chr17 7461294 7465427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00880 11 377 E2F-DP Transcription Factor Family AT3G48160 53.867 1.10e-126 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma17g00880 E2F_TDP 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00880 K09391 - gmx:100795252 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00880 17 7461294 7465427 Gma17g00880 17 7461294 7465427 ECH
Gma17g00880 17 7461294 7465427 Gma05g00320 05 2955233 2958390 GST
Gma17g00880 17 7461294 7465427 Gma04g01726 04 46605407 46610896 PCT
Gma17g00880 17 7461294 7465427 Gma06g01668 06 16643943 16647065 PCT
Gma04g01726 04 46605407 46610896 Gma17g00880 17 7461294 7465427 PCT
Gma06g01668 06 16643943 16647065 Gma17g00880 17 7461294 7465427 PCT