Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00869 ATGGCATCATTTGCAGGCACTACCCAGAAGTGCACAGCATGTGAAAAGAAAGTGTATTGGGTGGAACAACTCACTGCTGACAACAAGGTGTACCACAAATCTTGCTTCAGATGTCACCACTGTAAGGGTACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCCCATTTTGATCAACTGTTTAAGATGACCGGCAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAAGTGCTAGGGTTGAAAGATCTGCTGATCAGGTCCAAAGCAACAACAAGGTTTCAAGATTATTCTCTGGAACACAGGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGCTGTTGATGGCAAATCCTACCACAAGTCTTGTTTCAGGTGCACTCATGGAGGTTGTGTAATAAGCCCATCAAATTATGTTGCCCATGAACATCGTCTTTATTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGCAACTTCAGTCAATTAGACAAGCATGACAGTGTCCAAGTCGTCATCACTGAGAACACAACACAACATCCGGATCCGAGTAATGGCAATACCGATACAACTCCAGCTGAGGAATCTAGTTAA 630 0.4333 MASFAGTTQKCTACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRSARVERSADQVQSNNKVSRLFSGTQEKCVGCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKHDSVQVVITENTTQHPDPSNGNTDTTPAEESS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00869 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Gma17g00869 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Gma17g00869 209 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Gma17g00869 209 MobiDBLite consensus disorder prediction 187 209 - -
Gma17g00869 209 SMART lim_4 10 62 IPR001781 -
Gma17g00869 209 SMART lim_4 109 161 IPR001781 -
Gma17g00869 209 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 209 - -
Gma17g00869 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Gma17g00869 209 Gene3D Cysteine Rich Protein 5 75 - -
Gma17g00869 209 Gene3D Cysteine Rich Protein 104 174 - -
Gma17g00869 209 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Gma17g00869 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Gma17g00869 209 PANTHER OS06G0237300 PROTEIN 1 209 IPR045268 GO:0051015
Gma17g00869 209 Pfam LIM domain 110 165 IPR001781 -
Gma17g00869 209 Pfam LIM domain 11 65 IPR001781 -
Gma17g00869 209 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Gma17g00869 209 CDD LIM1_SF3 7 68 - -
Gma17g00869 209 CDD LIM2_SF3 110 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00869 Gma-Chr17 7374928 7378825 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gma17g00869 LIM 2.7e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00869 K09377 - gmx:100792627 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00869 17 7374928 7378825 Gma17g00869 17 7374928 7378825 ECH
Gma17g00869 17 7374928 7378825 Gma05g00329 05 3046641 3060600 GST
Gma17g00869 17 7374928 7378825 Gma04g01739 04 46791096 46800934 PCT
Gma17g00869 17 7374928 7378825 Gma06g01655 06 16463023 16466670 PCT
Gma04g01739 04 46791096 46800934 Gma17g00869 17 7374928 7378825 PCT
Gma06g01655 06 16463023 16466670 Gma17g00869 17 7374928 7378825 PCT