Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00860 ATGCGCAGCATTAATGGAAACTTGAAGTACTCATCATATTATCCTCAATCTCCCAACGACGTTAACATGAGCAGCAGCAACAATAAAGAAGCAACAACGGCATCATCTCTCAGCAGAATCAGTCCACTCATTCTACTAGTCATAATAGTTCTAGCAGTTATCTTCTTCGTCTACGGGCTCGTCCATTTGATTCTATGGTTTTTCATGAAAAGACCATTATCACCTTCATCTCTCTACAACTCCAACAGGTTCCACGAATACTCCACGCGCTCCCGTGTTCTTCTCCAAAGGCAGCTTCAGCAACTCTTCCGCTTGCACGATTCGGGTCTCGACCAAGCCGTCATAGACGCTTTACCCGTTTTCTGTTACCAGGACTTGTTGGGGTCGAAGGAACCGTTCGATTGTGCCGTGTGTTTGTGCGAGTTCTCCGAGGACGACAAGCTGAGGTTGCTTCCTATGTGCACGCACGCCTTCCACATGAACTGTCTTGACACGTGGCTTCTCTCCAATTCCACGTGTCCTCTTTGCAGGGCGTCTCTTTCCGAGTACATGGAGAATCAGAATCCAATGTTTAATGTTGGCAATTCCAGTTCTTTGGTTTTGCCAAATAGATTCAGGGTTGAAGAAGAGAATAATGGGTGTTCAGATAGTCAAAGGGTGTTTTCTGTGAGGCTTGGAAAATTCAGAAATGGAGAGGTGGGAGGGGACGGTGGTTGTAGTTTGAGTGAGAGGAGATGCTACTCTATGGGTTCGTATCGGTATGTGGTTCGTGATTTGAATTTGCAAGTCGTGTTATCTCATTCTCAATCTCAAGATGATGATGATGATGTTTTGGAAAATGGGAATGTGGAGGGGAAGAGGATAGGGGACTCAACCAAAGGTGAGAGCTTCTCTGTTTCCAAGATATGGCTTTGGTCCAAGAAGACCAGATTTCATGGTTCTAATGCACCTTTCCCTTGA 960 0.4552 MRSINGNLKYSSYYPQSPNDVNMSSSNNKEATTASSLSRISPLILLVIIVLAVIFFVYGLVHLILWFFMKRPLSPSSLYNSNRFHEYSTRSRVLLQRQLQQLFRLHDSGLDQAVIDALPVFCYQDLLGSKEPFDCAVCLCEFSEDDKLRLLPMCTHAFHMNCLDTWLLSNSTCPLCRASLSEYMENQNPMFNVGNSSSLVLPNRFRVEEENNGCSDSQRVFSVRLGKFRNGEVGGDGGCSLSERRCYSMGSYRYVVRDLNLQVVLSHSQSQDDDDDVLENGNVEGKRIGDSTKGESFSVSKIWLWSKKTRFHGSNAPFP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00860 319 SUPERFAMILY RING/U-box 114 189 - -
Gma17g00860 319 MobiDBLite consensus disorder prediction 270 290 - -
Gma17g00860 319 Pfam Ring finger domain 134 177 IPR001841 -
Gma17g00860 319 CDD RING-H2_PA-TM-RING 134 177 - -
Gma17g00860 319 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 319 - -
Gma17g00860 319 SMART ring_2 135 176 IPR001841 -
Gma17g00860 319 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Gma17g00860 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 319 - -
Gma17g00860 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 187 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00860 Gma-Chr17 7285976 7287309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00860 29 316 C3H Transcription Factor Family AT2G18650 40.173 1.10e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00860 - - gmx:100789990 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00340 05 3163454 3164443 Gma17g00860 17 7285976 7287309 ECH
Gma17g00860 17 7285976 7287309 Gma17g00860 17 7285976 7287309 ECH
Gma17g00860 17 7285976 7287309 Gma05g00340 05 3163454 3164443 GST