Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00852 ATGACTCAAAGGGATCGTCGCACCCTATCATTCCCGGCGGTTCACCCATGCGAAGCCATTTCTCCGCCGACACTTGTCACCTCTCTAATCACTCTCTCCCAATCCATATGCAATTTCCAACCCCAATCATTCCCCACCCAACGAAGGAACGCCAGGGAAACAATACGCCAAATAAGCATTGTCTTAATGTTCCTTCAAGAAATTCGACTAATCCCCAACTCCACTATCCTCTCTTTGGCGGAACTCCACTTCACCTTACAAAAAATCCACTTTTTATTGCAAGATTGCACCCTCCAAGGCTCGCGCCTCCTCCTGCTCGCCAAATCGCAACACGTAGCGTCCCTGTTCCCCGCCCTCCTTCGCTCCGTGGCCACCTCTCTGGACGTCTTGCCTCTTCACCAGCTCCACTTGTGCCCCGAAGTCAGGGAGCTGGCCGACCTTGTTACCAAGCAAGCCAGCAAGGCCAAGTTCCAGCTGGACCCCAGCGACGCACGTGCCACCAAAACCCTCCACACGCTTCTGCGCCAGTTCTCCATGGGCACCGAACCTGACCTCACTTCCATGCAGGGAATCCTCCACTACCTCCAAATTAGAACCTGGACAGATTGCAATACGGAGATTAAATTCTTAGAAGAAGAAATCACCTTAGAGTGCCGCGACCGTGAAGAAAAAGAGGTTCCCTTACTTAGTAGCTTGGTAGGGTTCTTATGTTACTGCAGAGGAGTTATTTTCGAAACTAATCAATCCCAAGGAAGATGCAGCACGGAGATGACATCGTTAAACTTAACCCTGTTGACGTCCGTTAATCCAGATGATTTCCGTTGCCCTATTTCTCTCGAGTTGATGACGGATCCGGTCACTGTGTCAACAGGTCAAACCTACGACCGAGCCTCTATTCAGAAATGGCTCAAAGCCGGGAACACAAAATGTCCCAAAACAGGGGAAAAACTAACAAACACGGACTTAGTTCCCAACACAACGCTCAAGAGACTCATCCAACAGTTCTGCGCCGACAACGGCATTTCCGTCGCTAACTCCTGTAACCGTAAAACCAACACCGTCTCAGCAGGTAGTCCCGCGGCGGCACACGCGATTCAGTTCCTCGCGTGGTTCCTCACGCGCAGGCTAGCATTCGGAACCCAAGACCAGAAGCACAAAGCCGCGCAGGAGATTCGCTTTCTCGCCAGAACCAGCATTTTCAATAGGGCGTGTTTGATTGAAATGGGAACAGTGCCTCCTCTGATTGAACTTTTAGCCTCTGCATCGAACGATAATAAATCCACGCAAGAGACTACAATCTCTGCTCTACTGAAGCTCTCTAAACACCCGAATGGACCCAAAAACATCATCAACAGCGGGGGCCTAACCGTAATTCTCTCGGTGTTAAAAAATGGACTTAGCCTTGAAGCTCGTCAAGTCGCGGCTGCTACAATATTTTATCTTTCTTCGGTGAAAGAATTTCGCAAGTTAATAGGGGAAAACCCTGATGTCATTCCGGCTTTGGTGGAGTTAGTTAAAGAAGGAACAACCTGTGGGAGAAAGAATGCTGTGGTTGCTATTTTCGGATTACTTTTGCTTCCTAGGAATCATCAAAGGGTTATCGCTGCTGGTGCTGTTCCGGCGCTTCTTGACATTATAGCTTCTTCGAATAAGGACGAGCTTGTGACTGAATCTTTGGCGGTTCTTGCCGCGCTGGCGGAGAACGTTGATGGGGCGCGTGAGATACTGCAAGGTTCGGCGTTGCGGTTGATTGTAGGGATGCTGCGATCTGCCACGTCACGCGAGGGGAAAGAGCACTCTGCTTCGATTTTGTTGTCGCTTTGCGTCAATGTTGGAGCGGAGGTTGTGGCGGTTCTCGCTAAGGAGCCTTCGTTGATGCCTTTGCTTTATTCGCTTCTCACGGATGGAACTTGTCATGCTGCAAAGAAAGCGCGGTTTCTCATCAAGGTCATACAGGATTTTCACGAGACTAGAAGTGCTGGACTCAAGGGTTCCTCGCTTCCGCAGGAACGCTCGCTTCACGTTTGGTGA 2031 0.5012 MTQRDRRTLSFPAVHPCEAISPPTLVTSLITLSQSICNFQPQSFPTQRRNARETIRQISIVLMFLQEIRLIPNSTILSLAELHFTLQKIHFLLQDCTLQGSRLLLLAKSQHVASLFPALLRSVATSLDVLPLHQLHLCPEVRELADLVTKQASKAKFQLDPSDARATKTLHTLLRQFSMGTEPDLTSMQGILHYLQIRTWTDCNTEIKFLEEEITLECRDREEKEVPLLSSLVGFLCYCRGVIFETNQSQGRCSTEMTSLNLTLLTSVNPDDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKAGNTKCPKTGEKLTNTDLVPNTTLKRLIQQFCADNGISVANSCNRKTNTVSAGSPAAAHAIQFLAWFLTRRLAFGTQDQKHKAAQEIRFLARTSIFNRACLIEMGTVPPLIELLASASNDNKSTQETTISALLKLSKHPNGPKNIINSGGLTVILSVLKNGLSLEARQVAAATIFYLSSVKEFRKLIGENPDVIPALVELVKEGTTCGRKNAVVAIFGLLLLPRNHQRVIAAGAVPALLDIIASSNKDELVTESLAVLAALAENVDGAREILQGSALRLIVGMLRSATSREGKEHSASILLSLCVNVGAEVVAVLAKEPSLMPLLYSLLTDGTCHAAKKARFLIKVIQDFHETRSAGLKGSSLPQERSLHVW 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00852 676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 344 IPR013083 -
Gma17g00852 676 SUPERFAMILY RING/U-box 269 343 - -
Gma17g00852 676 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 537 580 IPR000225 GO:0005515
Gma17g00852 676 SUPERFAMILY ARM repeat 374 651 IPR016024 -
Gma17g00852 676 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Gma17g00852 676 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Gma17g00852 676 PANTHER U BOX DOMAIN-CONTAINING 3 661 - -
Gma17g00852 676 Gene3D - 345 660 IPR011989 -
Gma17g00852 676 Pfam U-box domain 270 339 IPR003613 GO:0004842|GO:0016567
Gma17g00852 676 PANTHER OS07G0532750 PROTEIN 3 661 - -
Gma17g00852 676 SMART arm_5 442 483 IPR000225 GO:0005515
Gma17g00852 676 SMART arm_5 397 441 IPR000225 GO:0005515
Gma17g00852 676 SMART arm_5 526 567 IPR000225 GO:0005515
Gma17g00852 676 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 454 IPR000225 GO:0005515
Gma17g00852 676 CDD RING-Ubox_PUB 273 315 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00852 Gma-Chr17 7234924 7237304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00852 2 676 U-box Gene Family AT1G60190 40.725 2.89e-169 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00852 - - gmx:100787869 1302.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00852 17 7234924 7237304 Gma17g00852 17 7234924 7237304 ECH