Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00849 ATGAAAAACACAAACACTAATACTAGTGGTTCACCAAAACTTGATCGCAAAACTATTGAAAGGAACCGCAGGATTCACATGAAATCTCTCTGCTTCAAGCTTGTTTCCACTATTCCTTCCAATTACCTCAAAACCTCCAAGGACATGCTTTCCCAGCAGGATCAGCTTCATCTAGCAGCCACGTACATAAAGCATCTGAGAGAAAGAATAGAGAAATTGAAGGGGGAGAAGGAGAAAGCCATGAACATGATGATGATGTCAAACCAAAGCAATAATAGGATTTTCAATACTGGCTCTGAGTTGCCTCTACTTGAAATAAAGGACTTGGGTTCGGGCATTGAAGTGATGTTGATAAGTGGGTTGAATAAGAACTTCATGCTCTATGAAGTAATTAGTGTCCTTGAGGAAGAGGGTGCTGAAGTTGTCGCTGCCAACTTCTCCACCGTTGCTGATAAGATCTTTTTACACGTTTCATGCTCAGGTTAA 486 0.4095 MKNTNTNTSGSPKLDRKTIERNRRIHMKSLCFKLVSTIPSNYLKTSKDMLSQQDQLHLAATYIKHLRERIEKLKGEKEKAMNMMMMSNQSNNRIFNTGSELPLLEIKDLGSGIEVMLISGLNKNFMLYEVISVLEEEGAEVVAANFSTVADKIFLHVSCSG 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00849 161 Coils Coil 63 83 - -
Gma17g00849 161 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Gma17g00849 161 Gene3D - 2 94 IPR036638 GO:0046983
Gma17g00849 161 MobiDBLite consensus disorder prediction 1 20 - -
Gma17g00849 161 PANTHER TRANSCRIPTION FACTOR BHLH162 7 158 - -
Gma17g00849 161 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
Gma17g00849 161 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 78 IPR036638 GO:0046983
Gma17g00849 161 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 158 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00849 Gma-Chr17 7204027 7205292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00849 1 159 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.310 7.92e-26 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g00849 HLH 6.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00849 - - gmx:100787505 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00349 05 3255210 3256084 Gma17g00849 17 7204027 7205292 ECH
Gma17g00849 17 7204027 7205292 Gma17g00849 17 7204027 7205292 ECH
Gma17g00849 17 7204027 7205292 Gma05g00349 05 3255210 3256084 GST
Gma17g00849 17 7204027 7205292 Gma06g01637 06 16185385 16187126 PCT
Gma06g01637 06 16185385 16187126 Gma17g00849 17 7204027 7205292 PCT