Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00847 ATGGCCATCAGAGGCGTCGATTTCAAGTGGTACGATGGCTTTTTCTTGTTCATGCTCGCCACCAGTGTAGTTATTGTGGCAATCAATTGGAAGCGGTATCATTCTTGCACGTATCCGCTGCATATATGGATTGTGGTCGACTACACCACTGTGTTTGTTTTCCGGGTATTGATGTTTGTTGATAACGGGCTTTCTGCAGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTTTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCCAAGAACTGTTTGCCTGAAGTGGGTAAAAAATGGGGCTTTCTCATCTGGTTACTTTTTAGCTACTGTGGACTCTTTTGCATTGCTTGCATGTCTCTGGGGAAGTGGTTGACTCGAAGACAAGCACATTTATTGCGTGCCCAACAGGGTATCCCTGTATCTGAATACGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCCGCAGGCCAAGAAACAAGGGGCATGGGCCAAGATGCTGCTGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCTGGAACTACCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTCCGTGGCCTGCCCTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTCAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTTTTCCCAAACCTTGATCTTAGTGCACTGTCCAGTCTCCGTGCTGAGCCTGAACAATTTTCTGCCAGTGTTGTGACAACAGCCAGATATGTGAGAGGCCAACCATCTAGTCTAAGTTACCGGCTAAGATTGCAGGGTCTTCTGTGTCCAGTCCGTGCTGAAATTGCAGGACCAGTTGGTGACATAGATAATGCGTTGAAAAATGCTCAGAATGGCGTTGTATCAATTGTGACTCAAAATGCATCATCATCTGGAGACCAAGCCTCTTCTGTCGAATGCATGCCTGTTACTGTCTGTCATTCCTCTGCACAAAGTTAG 1152 0.4644 MAIRGVDFKWYDGFFLFMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRVLMFVDNGLSAGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEVGKKWGFLIWLLFSYCGLFCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALILELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSSLRAEPEQFSASVVTTARYVRGQPSSLSYRLRLQGLLCPVRAEIAGPVGDIDNALKNAQNGVVSIVTQNASSSGDQASSVECMPVTVCHSSAQS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00847 383 Pfam Ring finger domain 234 276 IPR001841 -
Gma17g00847 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Gma17g00847 383 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Gma17g00847 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 IPR044793 GO:0004842|GO:0010182
Gma17g00847 383 CDD RING-H2_RNF111_like 234 278 - -
Gma17g00847 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 - -
Gma17g00847 383 SMART ring_2 235 275 IPR001841 -
Gma17g00847 383 SUPERFAMILY RING/U-box 228 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00847 Gma-Chr17 7179772 7185469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00847 58 362 C3H Transcription Factor Family AT3G47990 71.753 3.84e-155 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00847 K16284 - gmx:100785373 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00847 17 7179772 7185469 Gma17g00847 17 7179772 7185469 ECH
Gma17g00847 17 7179772 7185469 Gma05g00351 05 3280403 3285778 GST
Gma17g00847 17 7179772 7185469 Gma04g01767 04 47207866 47213101 PCT
Gma17g00847 17 7179772 7185469 Gma06g01635 06 16156225 16161946 PCT
Gma04g01767 04 47207866 47213101 Gma17g00847 17 7179772 7185469 PCT
Gma06g01635 06 16156225 16161946 Gma17g00847 17 7179772 7185469 PCT