Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00832 ATGTCACCCTCATCAGTTTCTGTTACTCCTCTTATGGACAATATTGAAACAAACCTCACAGAAAACTATGCCTCAGAGTCAAAGCCAATGCATTTGCAAGAAAACTACTTGAAACCAAGCATGGAAGATCAGCTTCCTTTTGGAACTCCTTCCACGCAGGGTTTCTTGCAAGATTCTCATCACATTGATCATCTTCAGTTTCACGTGAATGGCTCCTCATCATCCAATCCAATTTTTGGGGTACAAACTCCAAATTTTGATCCCTTTGATCACAATGTAACATGTGAATCTGCACCTCCTGATTTTGAAGCTTATGAGTGCAAGCTTTTTGCTGAGAGTAATGGTAGTGGACATGCTCATCTTATGGACAATTTCCAATATGTAGGTTACAGTTTGAACCTTCCTCGGACGAATCAACTGGATTTGATGGTTGCAAACCAAAGTTATGTGCCCTTTAATGCTCTTGAAACCAAGCCTTTGAATTTTGTTGTACCAGATGAAGTCTCATGCATTTCCCCACCAAATTATTATAAGAGAGTTGGTTTGAATAAAAACCTCAGGGAATCTCCAAGCACTAGGATAACATTCAAGGCTCGGAAGAAGTCCAACATAGTGAAGGGGCAATGGACATCAGATGAAGACAGATTGTTGATTCAACTGGTCGAACAATATGGACTGAGGAAATGGTCACATATAGCTCAGGCGTTGCCTGGAAGAATAGGGAAACAATGCAGAGAACGATGGCATAACCATTTGAGGCCAGACATTAAGAAGGACATATGGACCGAAGAAGAGGATAAGATACTGATCCAAGCTCATGCAGAGATTGGAAACAAGTGGGCTGAAATTGCAAAAAAATTGCCTGGAAGGACTGAGAACTCAATCAAAAACCATTGGAACGCAACAAAGAGAAGACAATATTCCAAAAGAAAGTGTCGTTCAAAGTACCCTAGAGGCTCTCTTCTTCAGGAATACATCAAGAGCTTGAACTTGGACAAAAATCCACCAATAGACTATCGAAAAAAATCTGATAAAAATGCCAATGCCAAGACAAACAACAACGGCAAAGCAGCAGCTCAGCCCCAGTGTGCTGATCAATTTTGTCCCAATGGCCAGATTGTGCCAAGGTATGATTTTAACGAGGTCCCAGATTTTTCTTTGGATGATAACTTGTTTGAAGAGGGGTGCAGCATTGATTCTCTGCTAGATGATATGCAAAGTGCTTCTACTGTTGATCATGAGAAAGACTTTGATGGAAAAATAATGCAATGTGCTCCTACTATGGATGGAAAACAATCTCATCATCAGGTTGGCATACAGTGTGTTCATGTTGTTGATGAACATCATCATGATCATGAGACTGAGATGGTGGCACACACGATGGGGAATGAAGTTAAGAAGGAATTTGATTTGGTGGAAATGATGTCCCACATGAATGGAAGCCATTATAGTACACACTCACCACGTTGA 1470 0.4075 MSPSSVSVTPLMDNIETNLTENYASESKPMHLQENYLKPSMEDQLPFGTPSTQGFLQDSHHIDHLQFHVNGSSSSNPIFGVQTPNFDPFDHNVTCESAPPDFEAYECKLFAESNGSGHAHLMDNFQYVGYSLNLPRTNQLDLMVANQSYVPFNALETKPLNFVVPDEVSCISPPNYYKRVGLNKNLRESPSTRITFKARKKSNIVKGQWTSDEDRLLIQLVEQYGLRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDIWTEEEDKILIQAHAEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDKNPPIDYRKKSDKNANAKTNNNGKAAAQPQCADQFCPNGQIVPRYDFNEVPDFSLDDNLFEEGCSIDSLLDDMQSASTVDHEKDFDGKIMQCAPTMDGKQSHHQVGIQCVHVVDEHHHDHETEMVAHTMGNEVKKEFDLVEMMSHMNGSHYSTHSPR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00832 489 ProSiteProfiles Myb-like domain profile. 253 303 IPR001005 -
Gma17g00832 489 Gene3D - 205 258 - -
Gma17g00832 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 307 IPR017930 -
Gma17g00832 489 ProSiteProfiles Myb-like domain profile. 201 252 IPR001005 -
Gma17g00832 489 SMART sant 205 254 IPR001005 -
Gma17g00832 489 SMART sant 257 305 IPR001005 -
Gma17g00832 489 MobiDBLite consensus disorder prediction 333 358 - -
Gma17g00832 489 PANTHER MYB PROTEIN-RELATED 148 332 - -
Gma17g00832 489 CDD SANT 261 303 IPR001005 -
Gma17g00832 489 Gene3D - 260 322 - -
Gma17g00832 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 256 IPR017930 -
Gma17g00832 489 Pfam Myb-like DNA-binding domain 261 300 IPR001005 -
Gma17g00832 489 Pfam Myb-like DNA-binding domain 206 252 IPR001005 -
Gma17g00832 489 PANTHER BNAC07G50190D PROTEIN 148 332 - -
Gma17g00832 489 CDD SANT 209 252 IPR001005 -
Gma17g00832 489 SUPERFAMILY Homeodomain-like 203 299 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00832 Gma-Chr17 7026361 7028371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00832 132 405 MYB Transcription Factor Family AT4G18770 55.439 4.75e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma17g00832 Myb_DNA-binding 8.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00832 K09422 - gmx:100781456 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00365 05 3427998 3429951 Gma17g00832 17 7026361 7028371 ECH
Gma17g00832 17 7026361 7028371 Gma17g00832 17 7026361 7028371 ECH
Gma17g00832 17 7026361 7028371 Gma05g00365 05 3427998 3429951 GST
Gma17g00832 17 7026361 7028371 Gma06g01619 06 15902776 15904721 PCT
Gma04g01785 04 47785768 47787670 Gma17g00832 17 7026361 7028371 PCT