Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00826 ATGACGCAGTTATTCAATCTTATTAGTACCTGGCTAATACTGACATCGTCCTCGTTATTAATCCCACATGCGGCTTCCTACGACTTTGGGATACACGAGACGGGTCTCACGTGCGGGGCTTCTGAGAGCCCAGGATCGAGCGCGTCCAAGTTCATGGCCATAATGGACACGGTGTCGTTTCAGGTCAAAGAGCGAGGCTGGGGAGCGCAGACGCTCCTCGGTTCCGGGCCTCCGATGTACGCATTGGGCCAGTGCCGCCGCGACCTGAGGCCCACGGAGTGCTACACGTGCTTCACCCAAGCGAGGCAGGTGCTATCGCGGTGCGTGCCCAAGACAGCTGGCAGAATCTACCTCGACGGATGCTTCCTCCGCTACGACAACTACTCGTTCTTCCGCGAAAGCGTGGACCCCACGCGCGACATCAGCGTCTGCCAGTCGTCGCCGGGGCTTCGGAAAGACGGGGAAGGACGGGTGGCAGCAGCGGTGGCGAACGCGACGAAGGGCGCGGCGGAGTGCGGGTTCGCGGTGGCCGGAGTAGAGGGGGTTTTTGCGTTGGCGCAGTGCTGGGGGACGCTGGATAAAGGGACGTGCGAGAGATGCTTGAATGCAGCGGGGACAAGAGTGCAGGAATGTGTGCCTAATGCTCAGGGTAGGAGTCTGTTTACTGGTTGCTTTTTGAGGTACTCAACGCGCAAGTTCTACAACGACGTTGCACTGCATGGCATCAAGGATTCTACAAATTCTAGAGAAGGGCCTAGTACTGTCTGGTTGATGGTTGCATGTGTATTATTAGCGATTGTAGGGCTTTTGCTCGTCGTCCTTGCTGCATTTATATGCCGGAAAAGAATAGCATCATCGCGTAGAAATAAAATAAGCGACAGTTGCGGTGCGTCACCTGGTTTTGCCTACGTGACTGGCTTCAGTTTTAGGTACGATTTGCTTGAGAAGGCCACAAACTATTTCGATCCCGCAAACAAATTAGGGGAGGGTGGAGCTGGTTCTGTGTTCAAAGGAACCCTGCCCTCGGGAGGGACCGTTGCTGTTAAACGACTGTTTTTTAATGCCCGGCAATGGACAGAGGGGTTCTTCAATGAGCTCAACTTGATCAATGAGATTCAACACAAGAACGTGGTGAAGCTTTTGGGGTGCAGCATTGATGGTCCTGAAAGCCTTTTGGTTTATGAATTTGTGCCCCGTGGAAATCTTGATCAAGTCCTTTTCGGTAAGAACTCAGAAAATGCTCtgaactgggaacaacggtttcgaatcatatgtgggatagctgagggcttagcataccttcatggaggccctggaaaaaaaattattcacagagacataaagtccagcaacattctatttgatgagaatcttaatccaaaaatagctgattttggTCTTGCTCGTAGTGTTGCTGAAAACAAATCTCTTCTTAGCATAGGAAATGCGGAGACACTgggatatatggctcctgagtatgttatcaacggacaattgacagaaaaggcagatatctatgcttttggggtattggttattgaaattgtcagtggtaagaagaacagtgATTATATACCAGAGTCAACTTCAGTACTCCACAGTGTGTGGAAAAATTACAATGCAAATATTATCACATCATCCGTTGATCCCACTCTACATGGCAAGTTTACGGCAGAAGAGGCATCAAATGCACTCCAAGCTGGCCTTCTTTGTACACAGTCTTCTGATACTCTCAGACCATCCATGTCTGAAGTAGTTCAGATGCTAACAAAGAAAGACTATGTTATTCCCTCCCCAAATCAACAACCATTCCTCAATTCCATAGCCCGCATTCTATCCTCAAATGGGCATGCAAGTGCAAGATCCTCCTTCCACAGCACCACCAGTTCCCTAATTCCAAATGATGATGTAACAGTACTTGAGAATTCATTTTCTCCTTATTCCAGGTTCAACCCTACGGGGAGTCCTGACTCAAATATCCAAATATTGGGGTACCTGAGCCAAGGTAGGTGA 2013 0.4382 MTQLFNLISTWLILTSSSLLIPHAASYDFGIHETGLTCGASESPGSSASKFMAIMDTVSFQVKERGWGAQTLLGSGPPMYALGQCRRDLRPTECYTCFTQARQVLSRCVPKTAGRIYLDGCFLRYDNYSFFRESVDPTRDISVCQSSPGLRKDGEGRVAAAVANATKGAAECGFAVAGVEGVFALAQCWGTLDKGTCERCLNAAGTRVQECVPNAQGRSLFTGCFLRYSTRKFYNDVALHGIKDSTNSREGPSTVWLMVACVLLAIVGLLLVVLAAFICRKRIASSRRNKISDSCGASPGFAYVTGFSFRYDLLEKATNYFDPANKLGEGGAGSVFKGTLPSGGTVAVKRLFFNARQWTEGFFNELNLINEIQHKNVVKLLGCSIDGPESLLVYEFVPRGNLDQVLFGKNSENALNWEQRFRIICGIAEGLAYLHGGPGKKIIHRDIKSSNILFDENLNPKIADFGLARSVAENKSLLSIGNAETLGYMAPEYVINGQLTEKADIYAFGVLVIEIVSGKKNSDYIPESTSVLHSVWKNYNANIITSSVDPTLHGKFTAEEASNALQAGLLCTQSSDTLRPSMSEVVQMLTKKDYVIPSPNQQPFLNSIARILSSNGHASARSSFHSTTSSLIPNDDVTVLENSFSPYSRFNPTGSPDSNIQILGYLSQGR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00826 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Gma17g00826 670 Gene3D - 39 130 IPR038408 -
Gma17g00826 670 Gene3D - 155 233 IPR038408 -
Gma17g00826 670 SUPERFAMILY Protein kinase-like (PK-like) 307 613 IPR011009 -
Gma17g00826 670 ProSiteProfiles Protein kinase domain profile. 321 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00826 670 ProSiteProfiles Gnk2-homologous domain profile. 132 233 IPR002902 -
Gma17g00826 670 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 3 669 - -
Gma17g00826 670 Gene3D Phosphorylase Kinase; domain 1 286 396 - -
Gma17g00826 670 Gene3D Transferase(Phosphotransferase) domain 1 397 599 - -
Gma17g00826 670 CDD STKc_IRAK 327 591 - -
Gma17g00826 670 ProSiteProfiles Gnk2-homologous domain profile. 29 130 IPR002902 -
Gma17g00826 670 Pfam Salt stress response/antifungal 67 128 IPR002902 -
Gma17g00826 670 Pfam Salt stress response/antifungal 173 230 IPR002902 -
Gma17g00826 670 SMART serkin_6 321 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00826 670 Pfam Protein tyrosine and serine/threonine kinase 325 541 IPR001245 GO:0004672|GO:0006468
Gma17g00826 670 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 3 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00826 Gma-Chr17 6980631 6984999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00826 51 630 Receptor kinase-like Gene Family AT1G70520 42.454 5.46e-149 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma17g00826 PK_Tyr_Ser-Thr 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00826 - - gmx:100780384 1306.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02669 08 41678320 41682939 Gma17g00826 17 6980631 6984999 ECH
Gma18g01277 18 21937771 21941863 Gma17g00826 17 6980631 6984999 ECH
Gma17g00826 17 6980631 6984999 Gma17g00826 17 6980631 6984999 ECH