Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00812 ATGGCATCATCCAGCTCTTACAACTCTCCATGTGCAGCCTGCAAGTTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCGCCATACTTCCCACCCGAAGAGCCTCAAAAGTTCGCAAACGTCCACAAAATCTTTGGTGCCAGCAACGTAACCAAGCTCCTCAATGAACTCCTCCCTCACCAGAGGGAGGATGCAGTGAACTCCCTCGCCTATGAGGCAGAGGCACGTGTGAGGGACCCAGTTTATGGCTGTGTAGGAGCCATCTCTTTCCTTCAGAGACAAGTCCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAATGCTGATCTGCTACGCTATTCTTACACTGACATCACTCCAGCATCACTTTCTGTGCCACCAGGACTTGCTTCATTTCACCATGTTCCCCAGAGGCAGTTTAGTGCAAGATTTGGCAACGAATTAGCAAGTGGGTTTTATCGCCACCAGTCTACTACTGCTACTGCTTATTCCTTTCCTTATGCTCTTCCTTGGACTGATACCTCCTCGGAGGATATCAGTGAGGGAGCAGGAGGAGGAGGTAATTTGTGA 570 0.4965 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDITPASLSVPPGLASFHHVPQRQFSARFGNELASGFYRHQSTTATAYSFPYALPWTDTSSEDISEGAGGGGNL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00812 189 Coils Coil 89 109 - -
Gma17g00812 189 PANTHER ELONGATED PETIOLULE 1 1 186 - -
Gma17g00812 189 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Gma17g00812 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 186 - -
Gma17g00812 189 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00812 Gma-Chr17 6806434 6807003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00812 2 116 AS2 family AT5G63090 91.304 1.83e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma17g00812 LOB 3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00812 - - gmx:100775922 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00387 05 3636254 3636820 Gma17g00812 17 6806434 6807003 ECH
Gma17g00812 17 6806434 6807003 Gma17g00812 17 6806434 6807003 ECH
Gma17g00812 17 6806434 6807003 Gma05g00387 05 3636254 3636820 GST
Gma17g00812 17 6806434 6807003 Gma04g01810 04 48172079 48174576 PCT
Gma04g01810 04 48172079 48174576 Gma17g00812 17 6806434 6807003 PCT