Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00807 ATGGGTCGCCATTCGTGTTGTGTGAAGCAAAAATTGAGGAAAGGCTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATTACATAACAAGATTTGGAGTTGGATGCTGGAGTTCGGTTCCAAAACTAGCTGgactgcaaagatgtggaaagagttgcaggttgagatggataaactatttgaggcctgatttaaagagaggcatgttctcacagaaagaggaggatctaataatcagtcttcatgaagttctaggaaacagGTGGGCTCAAATAGCAGCACAGTTACCAGGGAGGACAGATAATGAGATTAAGAACTTCTGGAATTCATGTTTAAAGAAGAAGCTTCTGAAGCAAGGGATTGACCCAAGTACACACAAGCCCCTCACAGAAGCTCATGTGAAGGAAGAAAAGAAAATCACAGAGACATTATCACCTATGCAAACACCATTGTCTCAAGGTTCTTCAGTTCCATTAATATTTCCTTCATCACAGGGATCATCACTTCTAATAAGTGATTCCAATTACTATGATGGAGGACTAAAAGAAGCCTCAAGAGAAATTTTCATGACCAAGCCAGCATTGGATCCTTTGTCCTACTACGATTTTCCAATGGGTGTTGCACAGTCTGGTTTTAACTTACCTATGAGTCAGTATCAGACAAGCCTTAAAGCATCTGATCAGAACCCCTTTGGACCCAATTCAAGCTATGTATTCTCTACAATGCCAAGTCTAACCAATTCTGATCACGGGAACGTGTCGGTGACTGAGTTTTCAGACAACAATTCAGCTTCCAAAATCAGTTCATTGTTCATGAGTGACCAGGTGAAAGAAAGTTCCAGCAACAGCTCAAACATGAGCACTATTTACCCTATCAGCAGCAGCATGATGGAGAATGCAGGGTTCTCGTTGTGGGAGGGTGACAACAAGTTTGACCCTTTGTTTCAGTTCCAAGTAAATGCCACAAAATCAGAGGATTTTAAGACAAGTTCATGGGAAGAAGAGCAGCTGCATACTCAAAATTCCATAGATTTCACTAGCTTTCCGTTAACGTCACTTTCAGAAGATCTAACTGGAGCAAATTTTGATGTATTCCAGCATATATGA 1107 0.3631 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQKEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPSTHKPLTEAHVKEEKKITETLSPMQTPLSQGSSVPLIFPSSQGSSLLISDSNYYDGGLKEASREIFMTKPALDPLSYYDFPMGVAQSGFNLPMSQYQTSLKASDQNPFGPNSSYVFSTMPSLTNSDHGNVSVTEFSDNNSASKISSLFMSDQVKESSSNSSNMSTIYPISSSMMENAGFSLWEGDNKFDPLFQFQVNATKSEDFKTSSWEEEQLHTQNSIDFTSFPLTSLSEDLTGANFDVFQHI 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00807 368 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma17g00807 368 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma17g00807 368 CDD SANT 70 109 IPR001005 -
Gma17g00807 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma17g00807 368 CDD SANT 17 61 IPR001005 -
Gma17g00807 368 PANTHER MYB TRANSCRIPTION FACTOR 1 364 - -
Gma17g00807 368 PANTHER MYB DOMAIN PROTEIN 55 1 364 - -
Gma17g00807 368 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma17g00807 368 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gma17g00807 368 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma17g00807 368 Gene3D - 11 67 - -
Gma17g00807 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma17g00807 368 Gene3D - 69 143 - -
Gma17g00807 368 SMART sant 66 114 IPR001005 -
Gma17g00807 368 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00807 Gma-Chr17 6752674 6754143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00807 1 153 MYB Transcription Factor Family AT4G01680 75.817 4.13e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma17g00807 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00807 K09422 - gmx:100811140 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00807 17 6752674 6754143 Gma17g00807 17 6752674 6754143 ECH
Gma17g00807 17 6752674 6754143 Gma05g00389 05 3680427 3681955 GST
Gma17g00807 17 6752674 6754143 Gma04g01813 04 48247367 48248804 PCT
Gma17g00807 17 6752674 6754143 Gma06g01594 06 15499022 15500742 PCT
Gma04g01813 04 48247367 48248804 Gma17g00807 17 6752674 6754143 PCT
Gma06g01594 06 15499022 15500742 Gma17g00807 17 6752674 6754143 PCT