Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00804 ATGACGACCAGGTTCAAGAAGAACAGGAAGAAGAGAGGTCACGTCAGCGCCGGACACGGCCGTATCGGAAAGCACCGCAAGCATCCCGGAGGTCGCGGTAACGCCGGTGGCATGCATCACCACCGTATCCTCTTCGACAAGTACCATCCTGGTTTCTTCGGGAAGGTAGGCATGCGCTACTTCCACAAACTTCGCAACAAATTCTACAATCCGATCATCAACATCGACAAGCTGTGGTCCCTCCTCCCCCAGGAGGCCAAAGACAAGGCCACCGCCGACAAGGCACCCTTGCTCGATGTCACCCAGTTCGGTTACTTTAAGGTTTTGGGTAAAGGGGTTTTGCCTCAGAACCAGCCTCTTGTCGTCAAGGCCAAGCTTATTTCCAAGATCGCTGAGAAGAAGATCAAGGAGGCCGGTGGAGCCGTCGTTCTCACCGCTTGA 441 0.5465 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFYNPIINIDKLWSLLPQEAKDKATADKAPLLDVTQFGYFKVLGKGVLPQNQPLVVKAKLISKIAEKKIKEAGGAVVLTA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00804 146 SUPERFAMILY Ribosomal proteins L15p and L18e 6 145 IPR036227 -
Gma17g00804 146 MobiDBLite consensus disorder prediction 1 35 - -
Gma17g00804 146 Hamap 50S ribosomal protein L15 [rplO]. 1 145 IPR030878 GO:0003735|GO:0006412|GO:0015934
Gma17g00804 146 ProSitePatterns Ribosomal protein L15 signature. 107 139 IPR001196 GO:0003735|GO:0005840|GO:0006412
Gma17g00804 146 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 146 - -
Gma17g00804 146 Gene3D - 58 146 - -
Gma17g00804 146 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 IPR021131 -
Gma17g00804 146 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00804 Gma-Chr17 6726517 6727384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00804 1 146 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 84.932 8.45e-91 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00804 K02900 - gmx:100305936 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00391 05 3697105 3697545 Gma17g00804 17 6726517 6727384 ECH
Gma17g00804 17 6726517 6727384 Gma17g00804 17 6726517 6727384 ECH
Gma17g00804 17 6726517 6727384 Gma05g00391 05 3697105 3697545 GST
Gma17g00804 17 6726517 6727384 Gma04g01818 04 48288285 48289085 PCT
Gma17g00804 17 6726517 6727384 Gma06g01591 06 15462449 15463352 PCT
Gma04g01818 04 48288285 48289085 Gma17g00804 17 6726517 6727384 PCT
Gma06g01591 06 15462449 15463352 Gma17g00804 17 6726517 6727384 PCT