Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00803 ATGAACCCCTACGACAATAGATATTCCGACGCCGCTTCTTTTCGCGGCCGTCGCAGTGATTTCGTTGGACCTATTCCGCCTCCGTCTTTCGTCGGCCGCGGCGGCGCAGTTCCCTACGGCGTCCCCGGACCCAACGGGTTCGGATCCGCACCCGTTGCTCCGGTACCACCCTTTGTGCCTCCTTCCGGAGGCTTCAACGTAGGTCGAGGCGGTGGCAGAGCGGGCAATGGTCCCGTGAGTGATAGAAAACATGACATGGGTCGTGGCCGTGGTGGCGGCGGCGGTGGTAGAGCCGGAGCTCACGGTTTTAGGGGCTCCGCGAGAGGAGGAGGTAGACACGGTGGTGGTTCTTCTAGGGATGATTTGAACAACATTGCACTCCCGAAGCAGGATTTTAAGAATTTGGTCCCTTTTGAGAAGAACTTCTATGTTGAGTGCCCTGCCGTGAGGGCCATGTCTGAGCAAGAAGTTTTGCATTACCGTGCCAGTAGAGAGATCACCGTGCAAGGCAACGATGTGCCAAAGCCTATTATGATGTTTCACGAGGCGAATTTTCCTGATTACTGCCTTGAGGTTATTGCCAATCTGCGTTTTGCTGATCCCACTCCAATTCAAGCTCAGGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCACAACCTCGATTGGCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTGGCTGTTCAAATTCAGGAAGAGGCTCTTAAATTTGGGTCTCGGGCAAATAAAAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGTCCCCAAATTCGGGAGCTTAAAAGAGGCGTTGAAATAGTTATTGCCACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACGAACCTGCGGAGAGTGACTTACCTTGTCTTAGATGAAGCTGATCGAATGCTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGCCCAGATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGATGTTGAAACTCTGGCAAGGCAGTTTCTGCACAACCCATACAAGGTAATTATTGGGTCACCATACCTGAAGGCAAATCAATCTATAAATCAAATTGTTGAAGTTGTAACAGACATGGAGAAATACAATAGATTAATCAGACTGCTGAAAGAAGTGATGGATGGTAGCCGAATTTTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACGAGACAAATGAGAGTGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCAACAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACACCTTTTTTACACATGCCAATGCTAAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAGACTGTGAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGGATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTGGTTTAACGTCAGGTTCCAATGCCATTCCTCTAGGGAAGAAGAATGAAAATAGAAGAAAAGAAGATGGAATGAAGAAAAAATAA 1830 0.4754 MNPYDNRYSDAASFRGRRSDFVGPIPPPSFVGRGGAVPYGVPGPNGFGSAPVAPVPPFVPPSGGFNVGRGGGRAGNGPVSDRKHDMGRGRGGGGGGRAGAHGFRGSARGGGRHGGGSSRDDLNNIALPKQDFKNLVPFEKNFYVECPAVRAMSEQEVLHYRASREITVQGNDVPKPIMMFHEANFPDYCLEVIANLRFADPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAVQIQEEALKFGSRANKRSTCIYGGAPKGPQIRELKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLLWSATWPRDVETLARQFLHNPYKVIIGSPYLKANQSINQIVEVVTDMEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRVDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPTSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQTVSPALTALVRSAGSGQFGSGGGFRSRGRGGYGNRGLTSGSNAIPLGKKNENRRKEDGMKKK 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00803 609 Gene3D - 151 388 IPR027417 -
Gma17g00803 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 384 IPR014001 -
Gma17g00803 609 Pfam DEAD/DEAH box helicase 202 373 IPR011545 GO:0003676|GO:0005524
Gma17g00803 609 SMART ultradead3 197 400 IPR014001 -
Gma17g00803 609 CDD SF2_C_DEAD 397 527 - -
Gma17g00803 609 Gene3D - 389 560 IPR027417 -
Gma17g00803 609 SMART helicmild6 437 518 IPR001650 -
Gma17g00803 609 CDD DEADc_DDX5_DDX17 190 384 - -
Gma17g00803 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 412 557 IPR001650 -
Gma17g00803 609 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 330 338 IPR000629 -
Gma17g00803 609 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 77 589 - -
Gma17g00803 609 MobiDBLite consensus disorder prediction 64 123 - -
Gma17g00803 609 PANTHER LD32873P 77 589 - -
Gma17g00803 609 Pfam Helicase conserved C-terminal domain 408 518 IPR001650 -
Gma17g00803 609 MobiDBLite consensus disorder prediction 563 609 - -
Gma17g00803 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 538 IPR027417 -
Gma17g00803 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 178 206 IPR014014 GO:0003724
Gma17g00803 609 MobiDBLite consensus disorder prediction 595 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00803 Gma-Chr17 6719659 6725108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00803 165 538 Eukaryotic Initiation Factors Gene Family AT3G19760 34.492 3.55e-68 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00803 K12823 - gmx:100817092 1046.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00803 17 6719659 6725108 Gma17g00803 17 6719659 6725108 ECH
Gma17g00803 17 6719659 6725108 Gma05g00392 05 3702934 3708190 GST