Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00785 ATGGCACAAGATACTGTTTCTGGTGTTGACTCGCCTAGGCGACGTCTATTACGAGATCAGGTTCAAGTGGTTAAAAGAAAGGATTCCAATCGCTATGAAATTGTTCCTATCCAAGATTCTTTGTCATTTGAGAAAGGATTCTTCATATTTATTCGTGCATGCCAGTTGTTGGCTCAAAAGAACAATGGAATCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACCGAGAAGGTCCTCAATTTTATGCCAAGCATAGCTGTCATAACAATGGATAATTATAATGATTCTAGTAGAATTATTGATGGAAACTTTGATGACCCTCGGTTGACAGATTATGATACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTGTTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATCTATGCATTAAGTGAAAAATTACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGATCTTGTCAAGCGTGTTTTGCGGGACATTCATCGTGCCGGTCAAGAGCCTGAAGAAATAATCCATCAAATCTCTGAAACGGTGTATCCTATGTATAAAGCTTTTATTGAGCCAGATCTCAAAACAGCTCATCTAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTCCAGAATCCCACTTACATATTGAAGTCAGCAAGAGCTGTGACAGTTGATCAAATCAAGGCAATTATTGCTGCAGAGCATACTGAAACCAAAGAGGAAACGTATGACATATTTCTTCTACCCCCTGGGGAAGACCCTGAAGCTTGTCAATCATATCTGAGAATGAGAAACCGTGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGATACACAATTGCAGCTATCCTGAAAAGAAGCAGCCATGTCTTTCATGATGATAAAGTGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACCTATGTTCAGGTTCAAGGGAAAGACAGAAACTATTGCAAATTTGTAGCAGAGAAACTGAGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATCCAGCTTGAAAAGCTTGTAAATGATGTGATGGCATTGCCAGATGATCTTAAGACAAAACTCAGCATAGATGATGACTTGGTTTCGAGCCCCAAAGAGGCCCTTTCCAGAGCTTCTGCAGATAGGAGAATGAAGTATCTTAATCGTGGTATTTCACAATCATATTCAACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTCGATGCAAGAGCACTAGAATCACCTGCACCAATTGCTAACCAAGGAGTCATCACACAGCTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGACGAATTCACCTCCCGTATTGAAGAGCTGAATTCAAAGTTTGCTATCAGTAAAGATTCAGCAGCCAGTCAACAAAACTTGGCTTTACAGGCTGAGGCCTGCAATGGCTCTGGCCCCACTTCCTTCTTTGTAACTGGACTAAGCAATGGCTCATTGACTGGATCATTGCTACCTAATTCTTCATCATCTTCTCAATTGGCTAATAAAGAGTCTCCCCTGATGGAAGAGGTACTAGTTATTGCACGAGGACAACGTCAAATCATGCATCAACTAGACACTCTGAGCAATTTTTTGCATGAATACTTTGGAGAAAGGTCACGCCTGGGAAGACCAGACCATACAGGAAGAATGCGTGAAGCTGAATCCGTTGCCATCCCCCTGGTTCTGACTCTGGCCTTTGGTGCTGTTGGTGTGCTTTTGTTCAGAGGTTTTACATCCCAAAAATAA 1986 0.4094 MAQDTVSGVDSPRRRLLRDQVQVVKRKDSNRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNNGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGKPVQVPIYDFKSSSRIGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHLKIINKFNPFSGFQNPTYILKSARAVTVDQIKAIIAAEHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVTIKTDWLEQLNRTYVQVQGKDRNYCKFVAEKLRLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRMKYLNRGISQSYSTQRDKILPKLTKLAINNRRFDARALESPAPIANQGVITQLSDQISTLNERMDEFTSRIEELNSKFAISKDSAASQQNLALQAEACNGSGPTSFFVTGLSNGSLTGSLLPNSSSSSQLANKESPLMEEVLVIARGQRQIMHQLDTLSNFLHEYFGERSRLGRPDHTGRMREAESVAIPLVLTLAFGAVGVLLFRGFTSQK 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00785 661 SUPERFAMILY CYTH-like phosphatases 259 406 IPR033469 -
Gma17g00785 661 Coils Coil 499 526 - -
Gma17g00785 661 Pfam Phosphoribulokinase / Uridine kinase family 67 235 IPR006083 GO:0005524|GO:0016301
Gma17g00785 661 Gene3D - 65 245 IPR027417 -
Gma17g00785 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 235 IPR027417 -
Gma17g00785 661 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 8 649 - -
Gma17g00785 661 Pfam CYTH domain 271 403 IPR023577 -
Gma17g00785 661 Gene3D - 252 412 - -
Gma17g00785 661 ProSiteProfiles CYTH domain profile. 247 409 IPR023577 -
Gma17g00785 661 PANTHER URIDINE KINASE 8 649 - -
Gma17g00785 661 CDD UMPK_like 66 238 - -
Gma17g00785 661 PRINTS Uridine kinase signature 64 81 - -
Gma17g00785 661 PRINTS Uridine kinase signature 131 146 - -
Gma17g00785 661 PRINTS Uridine kinase signature 187 197 - -
Gma17g00785 661 PRINTS Uridine kinase signature 223 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00785 Gma-Chr17 6611494 6621296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00785 66 320 PRT Gene Family AT5G40870 25.758 2.74e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00785 K00876 - gmx:100811230 1241.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00157 05 1510607 1518897 Gma17g00785 17 6611494 6621296 ECH
Gma17g00785 17 6611494 6621296 Gma17g00785 17 6611494 6621296 ECH
Gma17g00785 17 6611494 6621296 Gma05g00157 05 1510607 1518897 GST
Gma07g02117 07 43015663 43032600 Gma17g00785 17 6611494 6621296 PCT
Gma20g00158 20 1624242 1644531 Gma17g00785 17 6611494 6621296 PCT