Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00782 ATGGGGTGCTCATTCTCCGGTCTGAATGCCTTATACGACTCCGTTAACGGCGGAGGCGATGTTTGGATCAACGAGAACCGTTTCCGCATCGTTCGCCAGCTCGGAGAAGGTGGCTTCGCCTACGTCTACCTCGTCAAGGAGACTCCTAATGATTCCGCCGTCGCTGCTGGCCTCTCCAAGAAGCTCAAAGGCTCCTCTCATCTCTCCGATGACGGGACTTATGCTATGAAAAAGGTCCTCATTCAGAACAATGAACAACTGGAGTTGGTTAGGGAGGAGATCCGTGTTTCATCACTGTTCAATCATCCCAATCTGCTGCCACTTCTTGAACATGCGATCATTTCTGTCAAGCCTACCCAAGAAACATCTTGGAACCATGAAGCATATTTGTTGTTTCCAGTTCATTTGGATGGAACATTGCTAGACAATGCCAAGATAATGAAAGCCAAGAAGGAATTCTATTCCACCTCAGATGTGCTTCAAATATTTCGTCAGCTTTGTGCAGGACTCAAGCACATGCACAGTTTTGATCCTCCTTATGCTCATAATGATGTCAAACCTGGTAATGTTCTCATAACACATAGAAAAGGACAACCACCTCTTGCCATACTGATGGATTTTGGCAGTGCTCGTCCGGCGAGGAAGCAAATTGGCTCCAGGTCAGAGGCCCTCCAGTTGCAGGAATGGGCATCTGAACATTGCTCTGCTCCTTTCCGAGCTCCTGAGCTGTGGGATTGCCCAAGCCAAGCTGATATAGATGAGAGGACTGACATTTGGTCATTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTTGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATTGTAAATGCACAGGTCAAATGGCCAGCTGGACCCAAGCCTCCATATCCAGAAGCTCTTCATCAGTTCGTGTCATGGATGCTTCAGCCAACGGCTTCTATGCGGCCCAGGATAGATGATATCATTATCCATGTTGATAAGTTAGTTGCGAAGTTTTCTCAATGA 1032 0.469 MGCSFSGLNALYDSVNGGGDVWINENRFRIVRQLGEGGFAYVYLVKETPNDSAVAAGLSKKLKGSSHLSDDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLEHAIISVKPTQETSWNHEAYLLFPVHLDGTLLDNAKIMKAKKEFYSTSDVLQIFRQLCAGLKHMHSFDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKQIGSRSEALQLQEWASEHCSAPFRAPELWDCPSQADIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQVKWPAGPKPPYPEALHQFVSWMLQPTASMRPRIDDIIIHVDKLVAKFSQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00782 343 Pfam Protein kinase domain 30 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00782 343 ProSiteProfiles Protein kinase domain profile. 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00782 343 SMART serkin_6 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00782 343 SUPERFAMILY Protein kinase-like (PK-like) 20 333 IPR011009 -
Gma17g00782 343 PANTHER - 1 342 - -
Gma17g00782 343 CDD STKc_16 27 337 - -
Gma17g00782 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Gma17g00782 343 Gene3D Transferase(Phosphotransferase) domain 1 15 342 - -
Gma17g00782 343 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00782 Gma-Chr17 6589639 6594185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00782 33 333 EF-hand Containing Proteins AT4G04710 24.510 1.09e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Gma17g00782 Pkinase 2.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00782 K08856 - gmx:100810160 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00782 17 6589639 6594185 Gma17g00782 17 6589639 6594185 ECH
Gma17g00782 17 6589639 6594185 Gma05g00159 05 1526391 1531212 GST