Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00778 ATGGCAGATGTAACCACCTACCTCCGCCACCACCCCGACTCCGaccccaaccccaatcccaaccccaaccccaaccccaaccccaaccccGACGACGACCAAACCCTGATTCCCTTTCCCTATTGGGATTTGGACTTCGATTTCGACCCCGAATTCCCCTCAAACACTCTCTCCTTCACCGACCGCGAAAATCAGGTCAATTTCATCATGGATCTCTTCCACCAGAGCGTGGAGCAGTCGCAACTCACCGATCCTCTCTCCAACGACGCCGTTTTCGGCGCCATCGATGGAATCGATTTAGGTTTCCCCGCCGCTGACGACTTCTTCGTCGGACAGAGATTCTCCGTCGGATCCGACGAATCGCACACTCACCCACACACGCTCGCGGCGAACGACGACGGCGTCCTAGGGTTCTGCGCGCATTCCAACGAAAACGACGACGTTGCAAGCATCCCTCTCTGCTGGGACGCGCTTCAATTAGAAGAAAACAACAACAACAACAACAACACCTACGAGGATTTCGAGTGGGAGGAAGTGATGGACGAGAGAGACGTTATCAGCATGCTAGATGACACCGTTTCCGTTTCCCTCGGAATTGAAGAGGAAACAGAAGCAGGAGCAGCAGAAGAAGATGCAGAATCTGAAGTCAGCATTTTGGAGTGGCAAGTTTTATTGAACTCCACCAATTTGGAAGGACCGAATTCGGAGCCTTATTTCGGAGATAGCGAGGATTTCGTTTACACCGCGGAGTACGAAATGATGTTCGGGCAATTCAACGACAATGCATTTAATGGGAAACCTCCGGCCTCCGCCTCCATCGTGAGGAGTCTTCCGTCGGTGGTTGTGACCGAAGCTGACGTGGCAAACGACAACAACGTGGTCGTCGTCTGCGCGGTTTGTAAAGATGAGTTTGGTGTTGGGGAAGGGGTGAAGGTGTTGCCGTGTTCGCATCGTTACCATGGGGAGTGCATTGTGCCGTGGTTGGGGATAAGGAACACTTGTCCCGTTTGTCGCTATGAGTTCCCCACTGATGATGCTGATTATGAGCGGAGGAAAGCGCAGAGATCTGTAATGTGA 1077 0.5014 MADVTTYLRHHPDSDPNPNPNPNPNPNPNPDDDQTLIPFPYWDLDFDFDPEFPSNTLSFTDRENQVNFIMDLFHQSVEQSQLTDPLSNDAVFGAIDGIDLGFPAADDFFVGQRFSVGSDESHTHPHTLAANDDGVLGFCAHSNENDDVASIPLCWDALQLEENNNNNNNTYEDFEWEEVMDERDVISMLDDTVSVSLGIEEETEAGAAEEDAESEVSILEWQVLLNSTNLEGPNSEPYFGDSEDFVYTAEYEMMFGQFNDNAFNGKPPASASIVRSLPSVVVTEADVANDNNVVVVCAVCKDEFGVGEGVKVLPCSHRYHGECIVPWLGIRNTCPVCRYEFPTDDADYERRKAQRSVM 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00778 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 344 IPR013083 -
Gma17g00778 358 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Gma17g00778 358 SUPERFAMILY RING/U-box 273 344 - -
Gma17g00778 358 MobiDBLite consensus disorder prediction 1 25 - -
Gma17g00778 358 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 105 357 - -
Gma17g00778 358 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 88 - -
Gma17g00778 358 PANTHER - 10 88 - -
Gma17g00778 358 PANTHER - 105 357 - -
Gma17g00778 358 SMART ring_2 297 337 IPR001841 -
Gma17g00778 358 Pfam Ring finger domain 297 338 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00778 Gma-Chr17 6561276 6562724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00778 149 344 C3H Transcription Factor Family AT5G60820 47.222 1.87e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00778 - - gmx:100814798 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00778 17 6561276 6562724 Gma17g00778 17 6561276 6562724 ECH
Gma17g00778 17 6561276 6562724 Gma05g00165 05 1565129 1566592 GST