Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00776 ATGTCGTCGTCGGCGTTGGGTTCCCCGAAGAAGCGGCTGAGAGCCCAAACAGAGGAGGAGGATGAGGAAGAGGTAGTTTGTTGCGGGATTTGCTACGCCGAGCGTGGGGTTTCGATTGCAGGGGAAATCGATTGCTGCAGCCACCACTTTTGCTTCGTTTGCATCATGGAATGGGCCAAGCACGAGTCTCGCTGCCCAATTTGCCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCTATGCATGGCGTATTTTCTTCTTCCAGGGACGTTAAGGTCCCCCATCGTGACCAGCTTTATCATCCTCATGGAAATATGGCAACTGGTCCTGCTGATTCTTATACTGAAACCAAATGTGGTGTTTGTCATGCCGGGACAGATGAACATCTTCTACTACTTTGTGATCTTTGTGATACTGCTTCACACACATACTGTGTTGGCCTGGGCTATACTGTTCCTGAAGGTGATTGGTTTTGTCACGATTGTGCTATTTCCCGGGAGATCAATATCAAGGAAGACTCGGACCAACAAAATGTTGTGCCAACAGCTGAGCCCAGAGTAACCGTCGATATCTTTGATATTGTGAGGGAAACAGGCAGCCAGGTGGTTCAGAGACCAAGGGCATCTCCTTCCGTTATTCCTTTACCTGATAGGTTAAGTTACTTAAGTAGATTAAAAGGAAAAAGACCTGTCACAGGGTTCTGTCATATGCAGCGGAATGTAAAGGCTTTTCGTGAAAATTGGAATGCTTTGAGAAGTGGTTCATTACAGTTCCGTTGCAATTCATCTCAACCTGGAAGCACAGTTAGTCAAAAACAAGATTCTAGTTCCTTATCACATCACAAATTGGATGATTTGCATTCTATGGCTTCCACAAGCCTTCAACAATCGACTGTCCAAGGTGGTCCTTCTAATAAAATGTTGAATGAGAGAGTCTTTAAAGATGCTGACAAGGCATGGAAAATGATGGACAGGGCAAAGAAAATACAACTGCCTCATCATAGAACAGGCAGAGTAGATAAACCCTCATGCAGTGGAGGAGCTAGAAAAATATCATTAGCACATTGCAACTTCTCCGAAGTGAAAGATCAACATTCCAAAGCATTAGACTTGAGGAACACTAAAAAAGAGAAGCAGTGTGACTATTCTAGGCTCAACCAGAATTTGGAAAATCGCTCTACTCTGAAGTTGGAAGAGAAAAGGCAAAGTAGGGATACATGTGAGAAGATGATACATGTGAGGGACCATACTACTCATTCAAAAGGATATTGTGAACGCCCATTGTCAAGAAAGGTCCATACTAGTATCCAGGGTGGTCCCTGTCGTGAAGATGGACTGAGAAATGTTGCTGAGGAACAAAGCTTGTATGCTTGCTTGGTAACATCAGCAGATTTAGCTTCCTCTCGTGACAAATTTGGCAGTATGTTCTCTAATAGGGGTGTGAATCTTGTTAATGAAGAAAAGAGATTGGCTAAAAGCTCTGAGGATGGAAACACAAGAAATATTGTTGATTCAAAAACTGAGATCCAGTCTCTTGTTAAATTGAATCTGAAGCTCTTAACTAGAGATAAAAAATTAGGCTTTGATACCTTCAAGGTAGTTGCAAGGCAGGCCACTCATACCATCTTGGCTGCTTGCAGTTCTGATCAGCAAAAGTCTAGTACATCCTCCTCTAGCTCAGTATGCAGCCATGCCGACAATACTCCTCAGTTTCAGAAATCTACTTTAATGCCTAATTGTTGCAGGCAATGCTTTTATAACTTTGTAAACAATGTTGTCCACTCCACCATATTGGAGAAAGTGGGTTGCGCTTGA 1812 0.4349 MSSSALGSPKKRLRAQTEEEDEEEVVCCGICYAERGVSIAGEIDCCSHHFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPHRDQLYHPHGNMATGPADSYTETKCGVCHAGTDEHLLLLCDLCDTASHTYCVGLGYTVPEGDWFCHDCAISREINIKEDSDQQNVVPTAEPRVTVDIFDIVRETGSQVVQRPRASPSVIPLPDRLSYLSRLKGKRPVTGFCHMQRNVKAFRENWNALRSGSLQFRCNSSQPGSTVSQKQDSSSLSHHKLDDLHSMASTSLQQSTVQGGPSNKMLNERVFKDADKAWKMMDRAKKIQLPHHRTGRVDKPSCSGGARKISLAHCNFSEVKDQHSKALDLRNTKKEKQCDYSRLNQNLENRSTLKLEEKRQSRDTCEKMIHVRDHTTHSKGYCERPLSRKVHTSIQGGPCREDGLRNVAEEQSLYACLVTSADLASSRDKFGSMFSNRGVNLVNEEKRLAKSSEDGNTRNIVDSKTEIQSLVKLNLKLLTRDKKLGFDTFKVVARQATHTILAACSSDQQKSSTSSSSSVCSHADNTPQFQKSTLMPNCCRQCFYNFVNNVVHSTILEKVGCA 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00776 603 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 78 IPR013083 -
Gma17g00776 603 ProSiteProfiles Zinc finger PHD-type profile. 115 164 IPR019787 -
Gma17g00776 603 ProSiteProfiles Zinc finger RING-type profile. 28 69 IPR001841 -
Gma17g00776 603 SMART ring_2 28 68 IPR001841 -
Gma17g00776 603 Coils Coil 367 387 - -
Gma17g00776 603 Pfam Ring finger domain 28 69 IPR001841 -
Gma17g00776 603 PANTHER PHD-FINGER FAMILY PROTEIN 219 603 - -
Gma17g00776 603 PANTHER PHD-FINGER FAMILY PROTEIN 3 211 - -
Gma17g00776 603 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Gma17g00776 603 SUPERFAMILY FYVE/PHD zinc finger 110 163 IPR011011 -
Gma17g00776 603 SUPERFAMILY RING/U-box 16 76 - -
Gma17g00776 603 Pfam PHD-finger 118 162 IPR019787 -
Gma17g00776 603 PANTHER HISTONE ACETYLTRANSFERASE 3 211 - -
Gma17g00776 603 PANTHER HISTONE ACETYLTRANSFERASE 219 603 - -
Gma17g00776 603 SMART PHD_3 117 162 IPR001965 -
Gma17g00776 603 MobiDBLite consensus disorder prediction 289 304 - -
Gma17g00776 603 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 183 IPR013083 -
Gma17g00776 603 MobiDBLite consensus disorder prediction 289 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00776 Gma-Chr17 6545097 6549407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00776 109 167 C2H2 Transcription Factor Family AT3G01460 36.667 3.16e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma17g00776 PHD 2.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00776 - - gmx:100808541 1168.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00776 17 6545097 6549407 Gma17g00776 17 6545097 6549407 ECH
Gma17g00776 17 6545097 6549407 Gma05g00167 05 1574391 1578780 GST