Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00775 ATGTCAACGCTCGCTCCGCATAGAAAGAGAAAGCGCAGGGTCCGACCCGAGACCTCATCTTTCGCCGTAGTGCTCGTTTTCAGAGTTACAAAGGAATCGACCCAAAAATTCTTCTGCTGTGGACTCCACTTCTCTACTGTTCCACCAATTCCTGCTCTCTGCTTCCACTCCGCACTACGATTCTGTGAAATCTCTGACTGGACGCTCTGTAATTGCGGAATTGAATTCTATGAGATAAGAGCGAAATTCAAAATTCCGTTGAAAACCGGGAAGGAAAAGGAAAACAGAAAAACGGAAAAGCATAATATTCAGGTTTTGATGGAGCTTCCTCAAGCACGTCCCCTTGGAACCGAAGCAGGGAGGAAACCGATGCATGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCTACCTTCTCAAGGAAGTTACCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGGGTAGAAACAAAAGCCTGTGCAAAGGAAGAAGCCACAGAAGAAATATTATCGGTGGTTCAAAAGCAACGTCCACCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGTATTAGCCACATTTCATATGTTAATAATAATAATAATCAAAGGGGGGTTCTGAAACCAGAGACATCATCCCTTTTCGTGCGTCAAGCAACTAGTACGGATAAGAATGAAGAAAACTCTAACTGCAGTTCATATACTTCAAGTGGTTTTACTTTGTGGGAAGAGTCATCAGGGAAGAGGGGAAATACAGGAAAGGAGAATAATGCGGGCGAGAAACCCTCTCTAGGAGTGACAGAGTCTGCAGCGAAGCTAGGGCAGTGGACATCAACGGAGCGAACGTCACAGTCGTTTTCTAACAATCGTCACGGCGGTTTCAGCTCTCGCTCTTCATCTCAGACAACTGGGCAGAAGAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAGGGATAGTAATGCCCAGGATGAAGTGCTAGAAAGCGAGGAAACATTTTTTCTCAAGAAAGAACCCTCCTCGAATACCCAAAGAGAACTCAGGGTGAAAGTGGATGCGAAGAGTACTGATCAAAAGCCAAACACACCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGCAAAATTAATGACAGGCAAGTATCTCCTACCAAGCTGATAGAACTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTGGAGGTCGTTGAGTATATTCATTTTTTACAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCCAGAAAAATTGATGCCATGGAGAAATAATGACAAGCCAGCAGAAACTTTTCAACCTCGTGGCACTGATAATGGATCAAGTCCATCTCCAACACTGCTGTTTGCTTCAAAGGTTGACGAGAAAAATATTACCATCTCCCAAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGCTCAGCAACTACCCCCAAGACAATGGATCATCATGCTGGAATGATGAACAAGGCTTTTCCAATTCCTATTCCTTCACAGCTAAATTTCTTCACTCCAACCCAAATAGGTGGTCCAGGTGGAGTAGTATCTCAGCTAACACATAGATCAGCATCAGATGCTGAGAAAACTAAATATCAACCTTCAGTGGAATGTCAGACTATGACTGCTACCAATGAAAAGCTGAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGCGTTTACTCAAAAGGGTTGTTGCATACGCTTACACATGCACTTCAAAGTTCAGGGGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGACCAAGTGTACCAGTGTCAGTGTGTGCTGCTAAGGATGGTGACGTTCATTCTAACAATCAAAAGATGATGCGCTCTAGAGTTGCTAGCTCTGGGAAGTCTGACCAAGCAGTTAAGAAGCTAAAGACATGCAGAAGTTAA 2031 0.4367 MSTLAPHRKRKRRVRPETSSFAVVLVFRVTKESTQKFFCCGLHFSTVPPIPALCFHSALRFCEISDWTLCNCGIEFYEIRAKFKIPLKTGKEKENRKTEKHNIQVLMELPQARPLGTEAGRKPMHDFLSLYSNSTAQQDPRLPSQGSYLKTHDFLQPLERVETKACAKEEATEEILSVVQKQRPPSVEHLLPGGIGTYSISHISYVNNNNNQRGVLKPETSSLFVRQATSTDKNEENSNCSSYTSSGFTLWEESSGKRGNTGKENNAGEKPSLGVTESAAKLGQWTSTERTSQSFSNNRHGGFSSRSSSQTTGQKNQSFIEMMKSARDSNAQDEVLESEETFFLKKEPSSNTQRELRVKVDAKSTDQKPNTPRSKHSATEQRRRSKINDRQVSPTKLIELIPHSDQKRDKASFLLEVVEYIHFLQEKVHKYEGSFQGWSNEPEKLMPWRNNDKPAETFQPRGTDNGSSPSPTLLFASKVDEKNITISQTIPGSTQNVESGLSSATTPKTMDHHAGMMNKAFPIPIPSQLNFFTPTQIGGPGGVVSQLTHRSASDAEKTKYQPSVECQTMTATNEKLKEKELTIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRPSVPVSVCAAKDGDVHSNNQKMMRSRVASSGKSDQAVKKLKTCRS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00775 676 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 107 673 IPR044295 GO:0003700|GO:0006351|GO:0046983
Gma17g00775 676 PANTHER TRANSCRIPTION FACTOR BIM1 107 673 - -
Gma17g00775 676 MobiDBLite consensus disorder prediction 342 393 - -
Gma17g00775 676 Pfam Helix-loop-helix DNA-binding domain 373 425 IPR011598 GO:0046983
Gma17g00775 676 MobiDBLite consensus disorder prediction 279 316 - -
Gma17g00775 676 MobiDBLite consensus disorder prediction 651 667 - -
Gma17g00775 676 Gene3D - 369 445 IPR036638 GO:0046983
Gma17g00775 676 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 371 424 IPR011598 GO:0046983
Gma17g00775 676 CDD bHLH_AtBIM_like 370 449 - -
Gma17g00775 676 MobiDBLite consensus disorder prediction 342 390 - -
Gma17g00775 676 MobiDBLite consensus disorder prediction 251 267 - -
Gma17g00775 676 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 369 445 IPR036638 GO:0046983
Gma17g00775 676 MobiDBLite consensus disorder prediction 645 676 - -
Gma17g00775 676 MobiDBLite consensus disorder prediction 251 316 - -
Gma17g00775 676 SMART finulus 377 430 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00775 Gma-Chr17 6524581 6534933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00775 107 628 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 45.985 1.71e-113 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g00775 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00775 - - gmx:100808016 1095.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00775 17 6524581 6534933 Gma17g00775 17 6524581 6534933 ECH
Gma17g00775 17 6524581 6534933 Gma05g00169 05 1594432 1602305 GST