Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00772 ATGCCCGGAGGGAGGTTTTTCTCCGGCTCCGGATCCGCCGACCGGAGGCTCCGACCCCACCATCAGAACCAGCAGGCCTTAAAGTGCCCCCGCTGCGACTCTCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGCAAGAACTGCCGCCGCTATTGGACTAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGTTGCCGCAAATCCAAACGCTCCTCCAAGCCCAACAAAATAACACCCTCTGAAACCGCTTCACCGCCACCACCCCCGCACCCCGACCACAACAACAACTCCAACTCTCATTCCAGCAGCGAGAGCTCCAGCCTCACCGCCGCCGCTGCCACCACCACCGAGGCCGTGTCGGCGCCGGAGACTTTAAACTCTGATTCCAACAACAACAACAACATGCAAGAGTCAAAGTTGTTGATCCCTGCTCTGGAAACTAATAATTCTCTGGAGCAGGGAACAGGGGACTGCGGTGGTATCTTCTCTGAAATTGGTCCTTTCACCAGTTTGATCACTACTACTACTTCCACTAATGAACCTTTAGGGTCAGGGTTCGGGTTCGGTAACTCCACTCTCCCCGATGCGTCGTCGTTTCAGTGGCACTACCAGAAGGTTAGCAGTAACAACGAAGAATTGAAGTTGCCGGAGAACTCCTTTCTCGATCACACCGTTGATTTGTCGGGGATGCATAGTAAAACCAGCCACGGGGGAGGATTCGGATCGTTGGATTGGCAGGGCGGTGCAGATCAAGGTTTTAATATATATGTATGTGGAATTTGA 816 0.5441 MPGGRFFSGSGSADRRLRPHHQNQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPNKITPSETASPPPPPHPDHNNNSNSHSSSESSSLTAAAATTTEAVSAPETLNSDSNNNNNMQESKLLIPALETNNSLEQGTGDCGGIFSEIGPFTSLITTTTSTNEPLGSGFGFGNSTLPDASSFQWHYQKVSSNNEELKLPENSFLDHTVDLSGMHSKTSHGGGFGSLDWQGGADQGFNIYVCGI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00772 271 ProSitePatterns Zinc finger Dof-type signature. 29 65 IPR003851 GO:0003677|GO:0006355
Gma17g00772 271 MobiDBLite consensus disorder prediction 105 146 - -
Gma17g00772 271 MobiDBLite consensus disorder prediction 1 26 - -
Gma17g00772 271 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 213 IPR045174 GO:0003700|GO:0006355
Gma17g00772 271 PANTHER DOF ZINC FINGER PROTEIN 4 11 213 - -
Gma17g00772 271 ProSiteProfiles Zinc finger Dof-type profile. 27 81 IPR003851 GO:0003677|GO:0006355
Gma17g00772 271 Pfam Dof domain, zinc finger 25 81 IPR003851 GO:0003677|GO:0006355
Gma17g00772 271 MobiDBLite consensus disorder prediction 71 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00772 Gma-Chr17 6486352 6487567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00772 14 262 C2C2-Dof Transcription Factor Family AT5G60850 40.755 1.72e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma17g00772 zf-Dof 2.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00772 - - gmx:778097 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00772 17 6486352 6487567 Gma17g00772 17 6486352 6487567 ECH
Gma17g00772 17 6486352 6487567 Gma05g00172 05 1638277 1639434 GST
Gma17g00772 17 6486352 6487567 Gma04g01525 04 41187381 41189095 PCT
Gma04g01525 04 41187381 41189095 Gma17g00772 17 6486352 6487567 PCT