Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00762 ATGGGAAGAGGGAGAGTTGAACTGAAGAGGATAGAGAACAAAATTAACAGGCAAGTCACATTTGCCAAAAGGAGAAATGGGTTGCTCAAGAAGGCTTATGAGCTCTCAGTACTTTGCGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCAGCAGCACCTCAAGTATGATGAAAACACTGGAGAAGTACCAGAAGTACAGCTACAGTGCACTGGAGACCACCCGTCCAATTAATGACTCTCAGAACTATCAGGAATATTTGAGATTAAAAGCAAGGGTAGAAGTTTTGCAATGTTCTCAAAGGAACCTACTTGGGGAAGATCTTGCCCAAATGAATACAAATGAGCTAGAGCAGCTTGAGAATCAACTGGAGACAGCACTGAAGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAACTTTCTGATCTTCATCACCGGGAAACATTGCTTATTGAAACCAATAATGTGTTAAGGAGTAAGTTGGAAGAAACTAATAATTCACAAGTTCAAGTAAGTCTAGCTTTGGAAGCTGGAGGGCCTAGCATCCAATACACCAACTTTCCACCTCAATCAGAGGGGTTCTTCCAGCCAATGGGAGTGAATCCCACCTTGCAAATTGGGTACAACCAGACTAATCCACATGATGCAAACGTTGGAGCTTCATCCTTAATGAAACGCGCTCTTTCCTTTCTACAGGCTTGA 729 0.428 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYQKYSYSALETTRPINDSQNYQEYLRLKARVEVLQCSQRNLLGEDLAQMNTNELEQLENQLETALKNIRSTKTQFMLDQLSDLHHRETLLIETNNVLRSKLEETNNSQVQVSLALEAGGPSIQYTNFPPQSEGFFQPMGVNPTLQIGYNQTNPHDANVGASSLMKRALSFLQA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00762 242 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma17g00762 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma17g00762 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma17g00762 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma17g00762 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma17g00762 242 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gma17g00762 242 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Gma17g00762 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma17g00762 242 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gma17g00762 242 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma17g00762 242 Coils Coil 116 143 - -
Gma17g00762 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma17g00762 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Gma17g00762 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma17g00762 242 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00762 Gma-Chr17 6433305 6442422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00762 1 216 MADS-box Gene Family AT5G15800 61.538 2.45e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma17g00762 K-box 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00762 K09264 K09260 gmx:100804810 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00181 05 1692235 1698021 Gma17g00762 17 6433305 6442422 ECH
Gma17g00762 17 6433305 6442422 Gma17g00762 17 6433305 6442422 ECH
Gma17g00762 17 6433305 6442422 Gma05g00181 05 1692235 1698021 GST