Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00752 ATGATGATAGAAAGTTCAAGTAAAGTTCATGGAGCCAATAACCAACAAGAGGGTGATGATAACAACATTAAAATTGAGAAGCTCTCAAAGGCACCCTCCACTTCCTCCTCATCAAGATCATGGTCAGCATTCAGAAATCCAAGAATTGTGAGAGTGTCACGTTCCTTGGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATTAGGGGACTGAGGGACAGAAGGATTAGACTTTCTGTTCCCACAGCAATTGAGTTATATGATCTTCAAGAAAAGCTTGGACTCAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAACCACCAAATCTGATATTGATAAGCTTCCACCACTTCAATTTCCTCACTGTTTTGCTCATCATCACCAACAAACCCTACTGCCAGGTACCTCTCAGTTTTCTCTTGGAGGCTTCTATGATGCTGCTGCTAATGGGGGAAATGAAAACCACCTCATGGCAACAAAGTCAACTAGGTATTGGGATATAGATTCACATTCACTAAATAATGGTAAGGATCTAGTTGAAAGTGTGTCAAACTCCCTAAAAGGAAAGAGCTGGATCAAAACAAATGAACAAGAAAATCATCAAGATGGAGGAATTGGTGGTAGTAGTAGCACTCATAACAATAGAGAGGAATATTCTTCAGCTCATTATAAGCTCTTCCCTATTGGGACAACTACTAATAACTCTTATTTACCTGGTTTGTTAAACAATGGCATGACACATAACTCATCCAACCACCATTCTGAGCCTTCAAGTCTATCTTTATCCCACTTTGGAAGCCATGGATTGTTTCCTTCATCACATAATGCCCATCCAAGCAGTTGCAGTGGTGTGCCATTTTCATCTTGTAATTTTTCTGCAGCATCATCTGGTCCCCAATTGCTTTTCTGTCCACCTACTTCTGCTACACCAGCATCTGCTTTTTACTCAGTGGAAAGTGATCCAAGACAATCCAACAACAATGTTCAGATCTTTAGCTCAAGTTCCCAAGTCATGATGCCTCATCCTCTCATCCAATCTCTTCATTCAACCAATTCAACTCTTAATCGACGCATTCCAACATCATTTAGTTCCAAACTTCTTGATTCAGATAACAACAATGATCGTAGCCAACCAAATAAGGGTAGTAGTACTACTCGTTCTTGA 1170 0.406 MMIESSSKVHGANNQQEGDDNNIKIEKLSKAPSTSSSSRSWSAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIELYDLQEKLGLNQPSKVVDWLLETTKSDIDKLPPLQFPHCFAHHHQQTLLPGTSQFSLGGFYDAAANGGNENHLMATKSTRYWDIDSHSLNNGKDLVESVSNSLKGKSWIKTNEQENHQDGGIGGSSSTHNNREEYSSAHYKLFPIGTTTNNSYLPGLLNNGMTHNSSNHHSEPSSLSLSHFGSHGLFPSSHNAHPSSCSGVPFSSCNFSAASSGPQLLFCPPTSATPASAFYSVESDPRQSNNNVQIFSSSSQVMMPHPLIQSLHSTNSTLNRRIPTSFSSKLLDSDNNNDRSQPNKGSSTTRS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00752 389 MobiDBLite consensus disorder prediction 1 24 - -
Gma17g00752 389 MobiDBLite consensus disorder prediction 1 19 - -
Gma17g00752 389 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 2 382 - -
Gma17g00752 389 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 382 IPR005333 GO:0003700
Gma17g00752 389 Pfam TCP family transcription factor 58 165 IPR017887 -
Gma17g00752 389 MobiDBLite consensus disorder prediction 196 216 - -
Gma17g00752 389 MobiDBLite consensus disorder prediction 362 389 - -
Gma17g00752 389 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00752 Gma-Chr17 6322213 6323751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00752 42 237 TCP Transcription Factor Family AT5G60970 45.238 5.41e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma17g00752 TCP 2.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00752 - - gmx:102670246 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00752 17 6322213 6323751 Gma05g00192 05 1815307 1816479 GST
Gma17g00752 17 6322213 6323751 Gma04g01558 04 42197830 42199065 PCT
Gma04g01558 04 42197830 42199065 Gma17g00752 17 6322213 6323751 PCT