Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00743 ATGGCCGCCAAAACGGTAACCCCTGACGCCGTTTCGATGCTCCTGGCAAACACTTGCCCCGATTCCTCATCGGATCTCCCCGAAATCGTTGTTCAAGTTCTCGATCTCAAGGCGACAGGCAATAAATACATGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTTCTTCGGATATGTGCTCTCAGGTGCTCTCCGGGGCTATTCAAAACCTAGGTCTTATTCGCGTCCTTGATTACACTGTCAACGTAATACCCAATAAATCGGACAAATACCTCATTGTCACTAAATGTGAACCTGTATCTCCTGCGCTTGAAATTGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGTCCAAGGTAGAGGGTGGAGTCAATACTGAAGGTCCTGCTGCTGCTGGGATTCTTCTCAAGCCCAAACAAGTAGTGACAAAATCTGCCAATCAGATTCTACGCGAACATGGAAATTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCCTTAAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTAACTATAAAAATGCTAGGGGTGATGGTTGTGTCTTCAATGTCGAATTGACGGATGAAGATGGTACTCAGATTCAGGCAACCATGTTTAATAATGCTGCGAGGAAATTTTATGACAAATTTATTCTGGGAAGGGTTTACTACATTTCAAAGGGGACTTTGAAAGTTGCTAACAAGCAGTTCAAAACCGTGCAAAATGATTATGAAATGACGCTTAATGAGAATTCTGAGGTGGAAGAGGTAGCCGGTGAAGCAAGTTTTGTTCCCGAAACGAAGTTCAACTTTGTGCAGATTGATCAGCTGGGTCCTCATGTAAATAAGTCCGAGCTTGTCGATGTCATTGGGATTGTTAAGAATGTGTCTTCAACAATGACCATTCGTAGGAAGAGCGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGACACCAAGAAGACAGTAGTTGTGTCCTTGTGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAGGCAAAAGTGTGGTTCTGGTAAATCCAGTCATACCCGAAGCAAAAAATCTCAGAAGCTGGTATGATTTTGAAGGCAAGGATGCTGCAATGGACTCTGTAGGCTCTGGTTCAAGTCCAACATCTAACAATGGGATTAGATCAGTGTACACTGATCGTGTTTTACTTTCTGACATAACCTCAAACCCATCATTGGGGGATGGCAAGCCCGCATTTTTCAGTCTTAGAGGACATATAAGCTTCATAAAGCCTGATCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCGTTGGTTCTGGATATTTGTGCGATGGATGCCAGAAAAGCGATGAGCAGTGCAGTTTAAGGTATATTATGGTTGCCAAGGTTTCTGATGCAAGCGCTGAGACTTATATCTCTGCCTTTAATCAGGAAGCTGAGAAGATCATTGGATGCTCTGCTGATGATCTAGATAACCTTAAATCACAAGAGGGAGAAGTTAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCTCAACATCTTTTTCGGGTAAGTGTTACTCCGAACGAGTATAATGGCGAGAAGAGACAAAGGATAACAGTTCGGGCAGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGGTTTCTGCTGGAAGATTTATCAAAGATGAGAGCATAA 1860 0.429 MAAKTVTPDAVSMLLANTCPDSSSDLPEIVVQVLDLKATGNKYMFTANDGKTKLKAMISSDMCSQVLSGAIQNLGLIRVLDYTVNVIPNKSDKYLIVTKCEPVSPALEIEIKSEESGSGILLKSKVEGGVNTEGPAAAGILLKPKQVVTKSANQILREHGNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRNYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKFYDKFILGRVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVAGEASFVPETKFNFVQIDQLGPHVNKSELVDVIGIVKNVSSTMTIRRKSDNESIPKRDITIADDTKKTVVVSLWNELATTTGQELLDIVDKSPVVAIKSLKVGDFQGVSLSTIGKSVVLVNPVIPEAKNLRSWYDFEGKDAAMDSVGSGSSPTSNNGIRSVYTDRVLLSDITSNPSLGDGKPAFFSLRGHISFIKPDQAMWYRACKTCNKKVTESVGSGYLCDGCQKSDEQCSLRYIMVAKVSDASAETYISAFNQEAEKIIGCSADDLDNLKSQEGEVNPYQMTLKEATWAQHLFRVSVTPNEYNGEKRQRITVRAVVPVDFAAESRFLLEDLSKMRA 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00743 619 Gene3D - 428 617 IPR012340 -
Gma17g00743 619 CDD RPA1_DBD_A 176 279 - -
Gma17g00743 619 Pfam OB-fold nucleic acid binding domain 188 273 IPR004365 GO:0003676
Gma17g00743 619 Gene3D - 5 113 IPR012340 -
Gma17g00743 619 Pfam Replication protein A OB domain 303 401 IPR031657 -
Gma17g00743 619 CDD RPA1_DBD_B 309 415 - -
Gma17g00743 619 Gene3D - 173 282 IPR012340 -
Gma17g00743 619 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gma17g00743 619 SUPERFAMILY Nucleic acid-binding proteins 442 617 IPR012340 -
Gma17g00743 619 CDD RPA1_DBD_C 451 616 IPR013955 -
Gma17g00743 619 Pfam Replication factor-A C terminal domain 464 610 IPR013955 -
Gma17g00743 619 PANTHER REPLICATION FACTOR A 1, RFA1 6 615 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma17g00743 619 SUPERFAMILY Nucleic acid-binding proteins 175 281 IPR012340 -
Gma17g00743 619 SUPERFAMILY Nucleic acid-binding proteins 292 419 IPR012340 -
Gma17g00743 619 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 6 615 - -
Gma17g00743 619 SUPERFAMILY Nucleic acid-binding proteins 22 108 IPR012340 -
Gma17g00743 619 Gene3D - 287 427 IPR012340 -
Gma17g00743 619 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 10 616 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00743 Gma-Chr17 6264091 6267119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00743 5 616 Core DNA Replication Machinery Family AT5G08020 67.805 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00743 K07466 - gmx:100808364 1210.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00743 17 6264091 6267119 Gma17g00743 17 6264091 6267119 ECH
Gma17g00743 17 6264091 6267119 Gma05g00200 05 1874954 1878277 GST