Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00740 ATGGCTTTCTTTGGTAGAATTGGGAATTTGTTACGACAGACAGCGAGCAGGCAGGTTAGTTCAAAATTGCGTTCGCCCCCTTCATTTTTTCAGGCTATACGCTGTATGTCATCTGCCCCAAGCACAAAACTGTTTATTGGAGGTGTTTCATATTCTACTGACGAGCAAAGCTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCTCGGATAATTATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTATTACATACACTTCGGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGTCAGGATCTTCATGGTCGCCCAATTAGGGTGAATTATGCTAATGAAAGACCTCGTGGATATGGTGGTGGTGGCGGCGGCTTTGGTTCATATGGTGCTGTAGGTGGCGGTGGTTATGAAGGTGGTGGTGGCAGCGGTTATCGTGGAAATGTTTCTGATGGTTATGGTGGTGGCAACTATAGTCGAAATGATGGGGGTGGTTATGGATATGGTGCAGGCAGTTATGGATCAGGCGGCAATTATGGGGACAGTGGCCCTGGCAATAACTACTCGGGAGGCTATAGTGGTAGTAACAGTGGACATTTTGGTGATGCCGGTAGTGTAGGCAATCATGAAAGCTCTACTGGTTTTGCCGGTAATGGATATGATGGAAGTGTCGTGGATGGCGGTGTTGGTGCAGGGTCGGAATTTGGCAGCAGTGGCCAATTAGATAGCAAAACAAGCAGCAATGGAGATGAGGGTTTTGGGGATTACAGGGATGACAACGATGCAGATAATTTTGCCAAGAGGGCTTGA 828 0.4698 MAFFGRIGNLLRQTASRQVSSKLRSPPSFFQAIRCMSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDLHGRPIRVNYANERPRGYGGGGGGFGSYGAVGGGGYEGGGGSGYRGNVSDGYGGGNYSRNDGGGYGYGAGSYGSGGNYGDSGPGNNYSGGYSGSNSGHFGDAGSVGNHESSTGFAGNGYDGSVVDGGVGAGSEFGSSGQLDSKTSSNGDEGFGDYRDDNDADNFAKRA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00740 275 CDD RRM_HP0827_like 43 119 - -
Gma17g00740 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Gma17g00740 275 SUPERFAMILY RNA-binding domain, RBD 38 150 IPR035979 GO:0003676
Gma17g00740 275 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 274 - -
Gma17g00740 275 SMART rrm1_1 43 116 IPR000504 GO:0003723
Gma17g00740 275 MobiDBLite consensus disorder prediction 234 275 - -
Gma17g00740 275 MobiDBLite consensus disorder prediction 242 256 - -
Gma17g00740 275 MobiDBLite consensus disorder prediction 257 275 - -
Gma17g00740 275 PRINTS Eggshell protein signature 38 54 - -
Gma17g00740 275 PRINTS Eggshell protein signature 127 142 - -
Gma17g00740 275 PRINTS Eggshell protein signature 152 162 - -
Gma17g00740 275 PRINTS Eggshell protein signature 181 199 - -
Gma17g00740 275 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 274 - -
Gma17g00740 275 Gene3D - 11 136 IPR012677 -
Gma17g00740 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00740 Gma-Chr17 6251765 6254919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00740 42 132 Eukaryotic Initiation Factors Gene Family AT4G34110 35.165 8.49e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00740 K12741 - gmx:100799124 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00740 17 6251765 6254919 Gma17g00740 17 6251765 6254919 ECH
Gma17g00740 17 6251765 6254919 Gma05g00203 05 1890589 1894142 GST