Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00716 ATGGGGGTGGAAGACCGTTTTCCGGTGGGTATGCGTGTACTTGCCGTTGACGACGACGAAACGTGCCTCTCAGTGTTGGAGAACCTGCTTCGCAAATGCCAGTATAATGTTACTACAACTAATCAGGCAATTAAGGCGCTAGACATGTTGAGGAAAAACAGAAACAAGTTTGACCTTGTTATTAGTGATGTGAATATGCCAGACATGGATGGGTTTAAGCTGCTTGAGCTAGTGGAACTTGAAATGGACCTACCAGTTATCATGTTGTCAGGATACGGTGATAAAGAGCGGGTCATGAGAGGTGTTATACACGGCGCTTGTGACTACTTAACGAAACCGGTTCGAATTGAAGAGTTACAGAACATATGGCAACATGTAGTGCGAAGGAGGATTGATAGCAAGGATAAGAATAAGACTGCAAGTGAGGGAAAAGCCTGCAGTATGGCTGGTAAGCTTGCAAATGAGGAGAAAGCCTGCTATATGGCTGGGGAATGTAGTCAAGCCATGGCATCAAAAAGTAATGCCGACCAGAATATAAAACTGGGTCAAAAAAGGAAGGAACAAAGCGAGGATGAGGAAGAGGAAGAATATGATCAAGAAAATGAAGAACCCTCAAATCAGAAGAAGCCTCGTTTAGTTTGGGATGCCGAGTTGCATAGGAAATTTCTTGCTGCGATTAATCATCTGGGAATTGACAAGGCTTTCCCCAAGAGAATACTGGACCTGATGAATGTTGAAGGACTTACACGAGAAAACATAGCAAGCCATCTGCAGAAATACAGACTCGGTCTCAAAAAATCCACTCAACAGCCTAGCATGGTTGCTACGTTGGGTAATAGTGATCCTTACCAGCAGATGGATTCAATAGAAGGCTTTCGCACTTTGTCGGGATCAGGAGGAATGATAAGCACCACACTACCATCATATGCAtctggtggactgttttgtaggctgaactccccatctggcttgagaggaattaactcttctcttcttgttcagcctgttcattctcAAAACATTGATAGCAGGTCCATAAAAACACTTGGAAACATGCAGCTATCCATGTTTTCTGCAAATCAAACCTCAAGTTTATTACAGGGCATTCCAACATCAATCGATGGTAACCAATTTCAGCAGAATAATTGTTCAATTGGTATTAGGAAGTTGAGTCCACTTGATGATTTATCAAGTGGATTTAAAGTTTCCTCTGGTTTCTCAAACAGTAGAGCTACTGTTAGAAATCCAAATAATTCTCTACATGGTCTCTCAAATAATCATTTACTTTTACAAGGAAATTCCCCACCAACACATAATTCTGGAGCATTCGGAAATCACTCTTCTCTTGGAGCTGCTTCGGTGAAAACACAATCCTTTGACCCTGGCATCTGTGAGTTGGGTTATAATCGGTGTAATAAAAGCTGGCAGGGAACAACTCAGATATCTAAGTTTCCTGCCAATACTTCTGCAGTCAGTAACAATGATCAGCTGGCTCAAAATAACTTGAACTTTTCCTCATCCACTTTTTGCAGTGGGAACAGCCCAGTTGATTTTTCTTCCACTAGTGTTGTTGCTCCTCCCTTGGAGGATGCTAGAGGTAAGCTACGATGTCAAGAAGGCTTACTTGAGAATATCTTACTGACATCATGTTACACCCAGCATCAGAGCTGGGAAGCAGATAACCGGGGTTGCAACAAAGAAATGAGTCAAACTTTCAACACCATAAAGTCTGTCTCTCCTAATGGAGACACTAGTTCCTTAGGACATAGTTTAGACCAAAACAATACAGTTAGCAGCAAGAGAATTGATGTATCTTTGGTTAATCCATCAGTCACGCAGTCTAGTGAAGATGAGAAATTCTATTCGATGGAGTCAATTGATGGCTGCATTTTGCAGAGCATGGAGTCCCAAGAAGATCTCATGCAGAATACTTTTGAGTCGTTGGATGACATAATGAGTGAAATAACCAAACAGGAGCAAAATGCCATTATGTTGATGGATGGAGAAATGGAGTTTGATGCTTACCATGTTGGATCATGCATTTGA 2046 0.3998 MGVEDRFPVGMRVLAVDDDETCLSVLENLLRKCQYNVTTTNQAIKALDMLRKNRNKFDLVISDVNMPDMDGFKLLELVELEMDLPVIMLSGYGDKERVMRGVIHGACDYLTKPVRIEELQNIWQHVVRRRIDSKDKNKTASEGKACSMAGKLANEEKACYMAGECSQAMASKSNADQNIKLGQKRKEQSEDEEEEEYDQENEEPSNQKKPRLVWDAELHRKFLAAINHLGIDKAFPKRILDLMNVEGLTRENIASHLQKYRLGLKKSTQQPSMVATLGNSDPYQQMDSIEGFRTLSGSGGMISTTLPSYASGGLFCRLNSPSGLRGINSSLLVQPVHSQNIDSRSIKTLGNMQLSMFSANQTSSLLQGIPTSIDGNQFQQNNCSIGIRKLSPLDDLSSGFKVSSGFSNSRATVRNPNNSLHGLSNNHLLLQGNSPPTHNSGAFGNHSSLGAASVKTQSFDPGICELGYNRCNKSWQGTTQISKFPANTSAVSNNDQLAQNNLNFSSSTFCSGNSPVDFSSTSVVAPPLEDARGKLRCQEGLLENILLTSCYTQHQSWEADNRGCNKEMSQTFNTIKSVSPNGDTSSLGHSLDQNNTVSSKRIDVSLVNPSVTQSSEDEKFYSMESIDGCILQSMESQEDLMQNTFESLDDIMSEITKQEQNAIMLMDGEMEFDAYHVGSCI 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00716 681 PIRSF RR_ARR_type-B 1 681 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gma17g00716 681 MobiDBLite consensus disorder prediction 172 210 - -
Gma17g00716 681 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Gma17g00716 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Gma17g00716 681 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Gma17g00716 681 SMART REC_2 11 123 IPR001789 GO:0000160
Gma17g00716 681 Coils Coil 183 203 - -
Gma17g00716 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 662 - -
Gma17g00716 681 CDD REC_typeB_ARR-like 13 127 - -
Gma17g00716 681 SUPERFAMILY CheY-like 10 134 IPR011006 -
Gma17g00716 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 662 IPR045279 GO:0009736
Gma17g00716 681 Gene3D - 10 146 - -
Gma17g00716 681 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Gma17g00716 681 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Gma17g00716 681 Pfam Myb-like DNA-binding domain 213 261 IPR001005 -
Gma17g00716 681 Gene3D - 205 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00716 Gma-Chr17 6070261 6073751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00716 5 382 Response Regulator Gene Family AT2G25180 49.610 8.08e-107 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma17g00716 Response_reg 6.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00716 K14491 - gmx:100803040 1318.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00716 17 6070261 6073751 Gma17g00716 17 6070261 6073751 ECH