Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00707 ATGCAACCTTGTAGCAGAGAAATGCAAGGCCCTAACACTACTAACTCTCTCTTCAACAACAATACTACCTGTAGTAATCAGCCGCAGATCCACTTCGACACCACTTCCAACGACGATTTCCTCAAGCAAATGCTTTCCAACCTCCCTTCTTCTTCATGGACCCTCGACCAAACCACACCCGATAATAACGTCGTTTTCCCCTACGACGTCGAACACGCCAACTTGGCCTCCAAGTTTCGCAACCACCAGATCACCACCGACAACGACAAGGCCTCCGCTCTCATGCTCCACCACCACCTCCTCCTCTCCTCCTCCGCCGCTGCCGCCAACTCCCAACTCCTCCACATGCCCTTTGACTCCTCCGCGCCAAACGACGTCGTTGACGCCCCCTCCTTCAAATCTCTCACTCCCAACGGTGAGCCTGCTTCCGTTCAAGCTCTCTACAACGGCTTCTCTGGATCTCTTCAACCCAATAATCAAACTCACCATTTTCAACAACACCCTCAGCCTCAGGTTCAGGGGCAGAGTTTTGGAGCTTCGGCTCCGGCTAACGGTGGCGGTTCGGGTCAGCCGAAGCAGAGGGTTAGAGCCAGGAGAGGACAAGCCACGGACCCACACAGCATCGCCGAAAGGTTACGGAGGGAGAGAATCGCAGAGCGAATGAAGGCCCTACAAGAACTAGTTCCTAATGCCAACAAGACTGACAAGGCCTCCATGCTGGATGAGAtcatcgattatgtgaagttcctacagctccaagtcaaggttttaagcatgagcagattgggcggtgcagcagctgtggcaccccttgttgctgagGGTGGCGGTGACTGCATCCAAGCCAAACGCAGCAACTCAAACGACAGCCTCGCCATGACGGAGCAACAGGTGGCGAAGCTGATGGAGGAAGACATGGGTTCCGCCATGCAGTACTTGCAGGGCAAGGGTCTATGCCTGATGCCTATTTCGCTCGCCAGCGCAATCTCCAAAGCCACGTGTCACCCCTTCATCAACGGTGATGGGCCCTCCTCTCCCCGAATGTCCGCGCTCACTCTGGCTAACGCCGTCGTCAAAGACGCGGCCTCCGTTTCCAAGTCCTGA 1104 0.5072 MQPCSREMQGPNTTNSLFNNNTTCSNQPQIHFDTTSNDDFLKQMLSNLPSSSWTLDQTTPDNNVVFPYDVEHANLASKFRNHQITTDNDKASALMLHHHLLLSSSAAAANSQLLHMPFDSSAPNDVVDAPSFKSLTPNGEPASVQALYNGFSGSLQPNNQTHHFQQHPQPQVQGQSFGASAPANGGGSGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVAEGGGDCIQAKRSNSNDSLAMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLASAISKATCHPFINGDGPSSPRMSALTLANAVVKDAASVSKS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00707 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Gma17g00707 367 PANTHER TRANSCRIPTION FACTOR BHLH69 29 342 - -
Gma17g00707 367 MobiDBLite consensus disorder prediction 1 20 - -
Gma17g00707 367 Gene3D - 196 258 IPR036638 GO:0046983
Gma17g00707 367 Pfam Helix-loop-helix DNA-binding domain 206 251 IPR011598 GO:0046983
Gma17g00707 367 MobiDBLite consensus disorder prediction 136 187 - -
Gma17g00707 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 261 IPR036638 GO:0046983
Gma17g00707 367 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 342 - -
Gma17g00707 367 Coils Coil 284 304 - -
Gma17g00707 367 MobiDBLite consensus disorder prediction 129 209 - -
Gma17g00707 367 SMART finulus 207 256 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00707 Gma-Chr17 6030962 6034930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00707 34 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 49.422 2.22e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g00707 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00707 - - gmx:100801457 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00707 17 6030962 6034930 Gma17g00707 17 6030962 6034930 ECH