Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00640 ATGGGTCATAGGCCACCAGAACAGCCACCATATTTTCTCTCAGAGCCAAACCCACCATTCCCACCCACTACTACTGTTCGATCTGATAGTTTCAGTTTGAACGATAGGGCCTTGAAGGTTAGTCCAAGCATCCTTCTGATCATCATAATTCTGGCTATTGTTTTCTTCATTTCTGGTTTGCTGCACCTTCTTGTTAGATTCCTGTGGAGACCCCAAACTAGAGAGCCTGATGAATTGGACAATGTCACCGCTCTCCAAGGCCAATTGCAGCAACTCTTTCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGACACACTCCCTGTGTTCCTCTACAAGGCCATCATAGGGCTCAAGAAGTACCCTTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTAAGGTTGCTACCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCAGCTTGCTCCCTGATCAATTCTCTGCAACCAACGCATGTTCTCCTATTGTTCTTGTCCTTGAATCTGGGAGTAGTGAGAGCTCCAGGGAAATCGTTCCCGAAAGAGTGGGTGCTTCTGCTGCTGTTGGAAGGACTAGTTCGGTTATGACCACAGATTCTCGCCTTGGTTGCCGTGGAGATAGTGAATTTGGATCGACCCGTGTGGATTTGATGAAATCAGGTGAGTTGTTAAGTGAAATTCCTGATCCAACAGTGCCTAATGGTGTGGAAAAAGTTGTTACTGTGAAGCTGGGGAAGTTTAGAAGTGTGGATGGTGGAGGTGAAGGTGGGGAAGGGAGTAGTAGTAGTACTAGTACCAACAACGTGGATGCTAGAAGGTGTTTCTCTATGGGGTCTTTTGCTTATGTCATGGATGAGAGTTCTTCATTGCAAGTACCTATAAGAACTCCAATCAAGAAGCAATCAAGTAAGAAGAAGTCTGGTTTGCCTTTGACACCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGGGTTTGATGCAACAACTATTATAGTTGAGGATGATGCTGCTACTAGTACTGGGGCTACAACTTCAAGCACAACTTGTAATGGGAACAGTGCTGCTGCCATTGGAAGGAGCAGAAAGGAGAGCTTTTCTATATCAAAGATTTGGCTTAGGGGGAAGAAGGATAAGCCAAATTCTGTGGCGGATTCGTCTAGAAGGGCTGTTTCGTTTCGATTCCCGGCGAAGTCGAGTGTTGTTACTGCTGCTTCTGGTAGTGCTCATGATGATGATGATGATGACTTGAAGGGCAAGAATTGCAAGTTTGATACAAGGAGTACTATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGGAGTGAGTTCGATTATGATGACGAAAACCAGAGTTGTTATAGTCTAGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAATAAGGTTGTTCACTCTGCTTCCAACCTCTAG 1569 0.457 MGHRPPEQPPYFLSEPNPPFPPTTTVRSDSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDELDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKKYPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDQFSATNACSPIVLVLESGSSESSREIVPERVGASAAVGRTSSVMTTDSRLGCRGDSEFGSTRVDLMKSGELLSEIPDPTVPNGVEKVVTVKLGKFRSVDGGGEGGEGSSSSTSTNNVDARRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAGFDATTIIVEDDAATSTGATTSSTTCNGNSAAAIGRSRKESFSISKIWLRGKKDKPNSVADSSRRAVSFRFPAKSSVVTAASGSAHDDDDDDLKGKNCKFDTRSTISEMDIGKWENGGGSEFDYDDENQSCYSLDSSQARAPSFARRTLLWLTGGRQNKVVHSASNL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00640 522 MobiDBLite consensus disorder prediction 1 25 - -
Gma17g00640 522 SUPERFAMILY RING/U-box 104 174 - -
Gma17g00640 522 SMART ring_2 126 167 IPR001841 -
Gma17g00640 522 Pfam Ring finger domain 125 168 IPR001841 -
Gma17g00640 522 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 425 - -
Gma17g00640 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 173 IPR013083 -
Gma17g00640 522 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 8 425 - -
Gma17g00640 522 MobiDBLite consensus disorder prediction 1 23 - -
Gma17g00640 522 CDD RING-H2_PA-TM-RING 125 168 - -
Gma17g00640 522 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Gma17g00640 522 MobiDBLite consensus disorder prediction 319 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00640 Gma-Chr17 5442836 5444911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00640 32 522 C3H Transcription Factor Family AT2G18650 45.181 4.97e-103 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00640 - - gmx:100812651 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00640 17 5442836 5444911 Gma13g00730 13 21451817 21453792 GST