Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00624 ATGGTACTTCCCTCCCCTGCCAAAATACTAGTTGGCCTCTCCTTAGACCCAGATGACAACAAGGAGCTTCTCTCATGGGCAATAAGAGTTTTAGCCAATCCAAATGACACCATTGTGGCTGTGCATGTTCTTGTTGTTGCGGACAAGAAGAAGCGTGTCTCGGTCAGAAGAAGGCAATCACAACTTAGGCAGGCAAAAGCTTATGTTATATCTGTGCTTGGAGAATTTGTACAATGCTGTTGGTCTAAGCAGGTTAATTTAGAGGCCAGGGTAGCACTCAATTCCTCAGTTGGTGAAGGTTTAGTGGAGGAAGCCAAGTCCATCAGTGCTGACTATCTTCTTATCCGTGGCTCGAGAAACCGAACAAATAAAATTGGAACTTCTAAAGGAATTACCAAGTATTGCTTTGAGCATGCACATGATGGGTGTACAATGGTCTCAGTTGGGAGACTTACAAAGGCAAATCAAAGTGCCAATTCAAACTCAACACGTTTTCAAGCAGATAAAAGACAACCAAGTTCAAGATGGTTTAAGAAGGATAACCAATATGGCAAGGGTACCTCCCCTGTTCTAAAGGATTATATATCAGGAAGCAAGGCTCAGAACCGTTCACCAAGAACAGTACTAAATGGTCTAGAGGGACAATCGAACAGCACTGAAGATGATACCTTCAGCACTAGGGTCTCAAGCACCACGTATACCCCATCGTCATCGGATTCTAAGAGGCGATCCAAGATAAGAAAACCACAGTTCTCGTTCAGGTTCATAGCCTCATTCCTTGCTTCACCATTTAGAAGCAAAAACTTTAGCATATCCAAAAATGAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAGATATCCAATGCTACCAAAGACTTCCACCgagATAATTTGGTTGGACGAGGTGGGTACTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAAGCATTGCTGTGAAGAGGTTGGCCAAGGACAACAAGGATCCTAACAAGGAAAAAGAGTTTCTTATGGAGTTGGGTGTTATTGGACATGTCTGCCATCCCAATACTGCAACTTTAGTGGGCTGCTGCATTGAAAATGGGCTTTATCTGATTCTCAATTACTCTCAAAATGGAAATTTGGCTACTACACTCCATGGTAAAGCAGGAGATTCACTAGACTGGCCAATCAGATACAAAATTGCCATTGGTGTTGCAAGGGGTCTTCATTATCTTCACAAATGTTGTAAACACCGAATAATTCACCGTGACATTAAAGCCTCTAATGTTCTTCTGGGTCCTGATTATGAACCACAGATTACCGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACCCACCATGCTGTGATCCCCGTAGAGGGCACATTTGGATACTTAGCGCCAGAGTACTTTATGCATGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATCCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCGAAGCAAAACCTTCTCTTATGGGCAAAGCCTCTTATGGAATCAGGGAATATTGCTGAGCTAGCTGATCCAAGAATGGAAGGAAAATATGATGGAGAGCAACTGCATAGGGTAGTTCTAACGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGTGAGGTATTAGAGCTGCTAACCAGTGGCCAAGAGAGTGAGATTGGAAAGAGCTGGAGGATCCCAAAGTTCATTTCTGAAGAATTGGATGATTACTCTATGGTTTTCGGATATGATGTACCCTCAGACATATCATTGGAGGATTATTTGTGA 1821 0.4305 MVLPSPAKILVGLSLDPDDNKELLSWAIRVLANPNDTIVAVHVLVVADKKKRVSVRRRQSQLRQAKAYVISVLGEFVQCCWSKQVNLEARVALNSSVGEGLVEEAKSISADYLLIRGSRNRTNKIGTSKGITKYCFEHAHDGCTMVSVGRLTKANQSANSNSTRFQADKRQPSSRWFKKDNQYGKGTSPVLKDYISGSKAQNRSPRTVLNGLEGQSNSTEDDTFSTRVSSTTYTPSSSDSKRRSKIRKPQFSFRFIASFLASPFRSKNFSISKNEKRQPLLKCFSYEQISNATKDFHRDNLVGRGGYSEVYKGDLSDGRSIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLILNYSQNGNLATTLHGKAGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIAELADPRMEGKYDGEQLHRVVLTASYCVRQTATWRPPMSEVLELLTSGQESEIGKSWRIPKFISEELDDYSMVFGYDVPSDISLEDYL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00624 606 MobiDBLite consensus disorder prediction 194 239 - -
Gma17g00624 606 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 122 - -
Gma17g00624 606 PANTHER OS08G0249100 PROTEIN 6 596 - -
Gma17g00624 606 Gene3D HUPs 4 148 IPR014729 -
Gma17g00624 606 SUPERFAMILY Protein kinase-like (PK-like) 271 563 IPR011009 -
Gma17g00624 606 Gene3D Transferase(Phosphotransferase) domain 1 374 576 - -
Gma17g00624 606 CDD USP_Like 8 140 - -
Gma17g00624 606 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Gma17g00624 606 SMART serkin_6 296 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00624 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Gma17g00624 606 Gene3D Phosphorylase Kinase; domain 1 258 372 - -
Gma17g00624 606 ProSiteProfiles Protein kinase domain profile. 296 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00624 606 MobiDBLite consensus disorder prediction 155 245 - -
Gma17g00624 606 Pfam Protein kinase domain 296 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00624 606 Pfam Universal stress protein family 8 140 IPR006016 -
Gma17g00624 606 PANTHER OS08G0249100 PROTEIN 6 596 - -
Gma17g00624 606 MobiDBLite consensus disorder prediction 155 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00624 Gma-Chr17 5274815 5278176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00624 284 602 Trihelix Transcription Factor Family AT1G70460 39.763 8.92e-72 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gma17g00624 Pkinase 3.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00624 - - gmx:100787158 1189.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00624 17 5274815 5278176 Gma17g00624 17 5274815 5278176 ECH
Gma17g00624 17 5274815 5278176 Gma13g00746 13 21658412 21661991 GST