Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00623 ATGGGAATTGAAAGAGGAGGCTTCAAGGGATTCAGGAGCGCCTGGAGCGTGCCGCCCAAGCCGTGCGATTCCTGCAAGCTGGCCTCGGCGGCGCTTTTCTGCCGCCCCGATTCCGCGTTTCTCTGCATCGCCTGCGATTCCAACATTCACTGCTCGAACAAACTCGCGTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAGGCACCCGCTGCTGTCACGTGCAAGGCCGACGCCGCCGCCCTCTGCGTCACGTGTGACTCCGACATCCACTCCGCGAACCCCCTCGCGCAACGCCACGAGCGCGTCCCCGTGGAACCTTTCTTTGACTCCGCTGAGTCCATAGTGAAAGCCTCTGCTGCCGCCACCTTCGGGTTCATTGTCCCATCCGACGACGGCGGCGCCTCCGACGCTTTCGCCCCCGATGACTCCGACGCCGCCGCGTGGCTCATCCCGAACCCTAATTTCGGGTCCAAGCTCATGGACGCCCCCGAAATCAAGTCCAAGGAGATATTCTTCTCTGAAATGGACCCCTTCCTCGATTTTGATTACTCAAACTCCTTCCAAAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCAGTTCAAAAACCCTCTCTCGCCCCTCCCCTAATCAATAATCACCACCACCACCAATCAGAAACTTGCTTCGACGTCGATTTTTGTCGCTCGAAGCTCTCCTCCTTTAACTACCCTTCCAATTCTCTTAGCCAAAGCGTTTCGTCGTCGTCGCTTGATGTTGGAGTGGTGCCGGACGGGAACACGGTGTCAGACATGTCGTATTCTTTTGGTCGGAACAGTTCGGATTCGAGTGGGATTGTTGTTGTGTCAGGAAATAGTGTGGGGCAAGGTGCGACGCAGTTGTGTGGAATGGATCGGGAAGCGAGGGTACTGCGATACAGAGAGAAAAGGAAGAACCGAAAATTCGAGAAGACAATTCGATACGCATCGCGAAAAGCATATGCGGAAACCCGGCCCAGGATAAAAGGCCGCTTCGCCAAACGAACAGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCCCTGCGGTGCTCATGCTGGACACTCCATACGGCGTCGTACCATCGTTTTAG 1125 0.5644 MGIERGGFKGFRSAWSVPPKPCDSCKLASAALFCRPDSAFLCIACDSNIHCSNKLASRHERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLAQRHERVPVEPFFDSAESIVKASAAATFGFIVPSDDGGASDAFAPDDSDAAAWLIPNPNFGSKLMDAPEIKSKEIFFSEMDPFLDFDYSNSFQNNNSAGNDSVVPVQKPSLAPPLINNHHHHQSETCFDVDFCRSKLSSFNYPSNSLSQSVSSSSLDVGVVPDGNTVSDMSYSFGRNSSDSSGIVVVSGNSVGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGPAVLMLDTPYGVVPSF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00623 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 8 374 - -
Gma17g00623 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 374 IPR045281 GO:0009909
Gma17g00623 374 CDD Bbox1_BBX-like 65 107 - -
Gma17g00623 374 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Gma17g00623 374 SMART bboxneu5 17 64 IPR000315 GO:0008270
Gma17g00623 374 SMART bboxneu5 65 107 IPR000315 GO:0008270
Gma17g00623 374 Pfam CCT motif 302 344 IPR010402 GO:0005515
Gma17g00623 374 CDD Bbox1_BBX-like 21 64 - -
Gma17g00623 374 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Gma17g00623 374 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
Gma17g00623 374 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00623 Gma-Chr17 5259545 5260815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00623 1 374 C2C2-CO-like Transcription Factor Family AT5G57660 55.208 1.96e-122 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma17g00623 zf-B_box 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00623 - - gmx:100805693 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00623 17 5259545 5260815 Gma17g00623 17 5259545 5260815 ECH
Gma17g00623 17 5259545 5260815 Gma13g00747 13 21672898 21674834 GST