Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00604 ATGGAAAAGCAACAACCTACACAGCCTCAGCCTCACCACGACTTCATTTTCCGTTCCAAACTCCCCGACATTTACATCCCAACGCACCTCCCTCTCCACACTTACCTTTTCCAAAACCTCTCACAATTCAAAGACCTTCCATGCCTCATCAATGCCGCCACCGGCGAGACTTTCACCTACGCCGCCGTCGAACTCACCGCCCGCAAAGTTGCCTCCGGTTTCAACAAACTCGGCATCCAAAAAGGCGACGTCATCCTCCTTCTCCTCCAGAACTGCCCCCAATTCGTCTTCGCATTCCTCGGCGCCTCCTACCGCGGTGCCACCGTCACCGCCGCCAATCCTTTCTACACTCCGGCGGAGGTAGCGAAACAAGCCACAGCGTCCAACTCCAAACTCATCATAACGCAAGCATCTTACGTGGATAAAGTAAAGGATTTTGCGAGAGAAAACGACGTCAAAGTGATATGCGTTGACTCGGCGCCGGATGGTTACCTTCACTTCTCGGTGTTAACGGAGGCCGACGAGGGAGACATTCCCGCCGTTAAAATATCTCAAGATGACGTGGTTGCGCTGCCGTACTCGTCTGGCACGACGGGGCTTCCGAAGGGAGTGATGCTAACGCACAAGGGACTCGTTACGAGCGTGGCTCAACAGGTTGACGGAGAGAACCCTAATTTGTACTTTCGCAGCGACGATGTGGTAGTGTGTGTTCTGCCACTTTTCCACATTTATTCGCTCAACTCTGTTTTGCTGTGTTCGCTTCGAGTTGGGGCTGCCGTTTTGATCGTTCCGAAGTTTGAGATAGTTGCGTTGCTGGAGTTGGTGCAGAAACACAATGTGAGCGTCGCGCCGTTTGTGCCGCCAATCGTTTTGGCCATTGCTAAGAGTCCTGATGTGGAGCGATACGACGTGTCGTCGATTCGGATGATCATGTCTGGCGCGGCACCCATGGGAAAGGAACTTGAGGATTCTGTGAGGGCTAAGCTTCCCAACGCCACACTTGGACAGGGTTATGGGATGACGGAGGCAGGACCAGTGCTATCAATGTGCTTAGCGTTTGCGAAGGAGCCAATGCAGGTCAAATCAGGTGCCTGCGGGACCGTCGTAAGAAATGCGGAGATGAAAATTATTGATCCTGATACTGGCGCTTCGCTTCATAGGAATCAAGCTGGTGAGATTTGCATTAGAGGCAACCAGATCATGAAAGGTTACCTAAATGATCAAGAGGCCACAGAAAGAACTATAGACAAAGGAGGATGGTTGCACACAGGTGATATTGGATACATAGATGATAATGATGAGCTCTTCATCGTTGACCGGTTAAAGGAGTTGATTAAATATAAAGGATTTCAAGTGGCTCCAGCTGAGCTCGAAGCCATGCTAGTTGCTCATCCTAACATCTCTGATGCTGCCGTTGTATCAATGAAGGATGAAGTTGCAGGAGAGGTTCCAGTTGCATTTGTTGTACGATCAAATGGTTCAATGATTTCTGAGGATGAAATAAAGCAATACATCTCAAAGCAGGTTGTATTTTACAAAAGAATTAGTAGAGTTTTCTTTGTGGGCTCAATTCCAAAGGCACCCTCTGGAAAGATCTTTCGAAAAGACCTCAGGGCCTGGCTTGCAACCGATCTTGCTATTTAG 1644 0.4945 MEKQQPTQPQPHHDFIFRSKLPDIYIPTHLPLHTYLFQNLSQFKDLPCLINAATGETFTYAAVELTARKVASGFNKLGIQKGDVILLLLQNCPQFVFAFLGASYRGATVTAANPFYTPAEVAKQATASNSKLIITQASYVDKVKDFARENDVKVICVDSAPDGYLHFSVLTEADEGDIPAVKISQDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFRSDDVVVCVLPLFHIYSLNSVLLCSLRVGAAVLIVPKFEIVALLELVQKHNVSVAPFVPPIVLAIAKSPDVERYDVSSIRMIMSGAAPMGKELEDSVRAKLPNATLGQGYGMTEAGPVLSMCLAFAKEPMQVKSGACGTVVRNAEMKIIDPDTGASLHRNQAGEICIRGNQIMKGYLNDQEATERTIDKGGWLHTGDIGYIDDNDELFIVDRLKELIKYKGFQVAPAELEAMLVAHPNISDAAVVSMKDEVAGEVPVAFVVRSNGSMISEDEIKQYISKQVVFYKRISRVFFVGSIPKAPSGKIFRKDLRAWLATDLAI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00604 547 CDD 4CL 26 537 - -
Gma17g00604 547 Gene3D - 8 441 IPR042099 -
Gma17g00604 547 Pfam AMP-binding enzyme 38 447 IPR000873 -
Gma17g00604 547 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Gma17g00604 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 541 - -
Gma17g00604 547 Gene3D - 442 546 IPR045851 -
Gma17g00604 547 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 12 541 - -
Gma17g00604 547 SUPERFAMILY Acetyl-CoA synthetase-like 10 543 - -
Gma17g00604 547 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00604 Gma-Chr17 5059594 5064271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00604 1 509 Monolignol Biosynthesis Gene Families AT1G51680 69.884 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00604 K01904 - gmx:100779668 1080.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00604 17 5059594 5064271 Gma17g00604 17 5059594 5064271 ECH
Gma17g00604 17 5059594 5064271 Gma13g00763 13 21827933 21835326 GST