Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00590 ATGTATTCGAGTCCAAGCCAGTTCGACGGAAATGCAGCCTTCTCCGGTGGTGGATTCATGCCTTCTCAGACCACTCAGGGCCCCGACTCTTCGTTGGTTCCTTCCAAGAATCGCGACGCTCAGTCCTTGCTTCCTCTGACAGTGAAGCAGATATACGATGCAGTCACTCTTGTAGGAAGGGTGTCCAACAAAACTGGACGAATTACTGATGTTACTTTTGTGCTTGATGATGGTACTGGAAGGATTGAGTGTAGTAAATGGCTTCATGAAGCTGTTGATACAAATGAAGCAGAGGCTATCTTGGACGGAATGTATGCGAGGCTCCATGGACAATTAAAACATTTTCAGCGTAAAAGGACCTTAACTGTTTTCTCTTTTAGGCCTGTGACTGACTTTAATGAGATTGCTAGTCATTTCAGCGATTGCATATATGTGCATCTCTACAATTCCAGATTAAGGTCTAGTGTCCCTAATCAGCAGCATTCCTCACCAATTCCTCCCACAATAGTTTATCAAGCACAAGCTGTTCCGCCAACAAATCAGTTCTCTGATCAACATATCAATGGTCAGAAGGGTGTTACTGTTGAAGCCATGGTCTTAGATTTTTTGCATCATCCCACAAACAGGTATTTTTTTAAGTTATTTTATTTAATGTTGTCTATTTGTCTCTTGCTGGCTATTAAAAATCTTATTGATGAAGGTGCCGTTTATGAAACCATAGGTGATCACAATAAGTCAATCATCAATGGTTGA 753 0.4157 MYSSPSQFDGNAAFSGGGFMPSQTTQGPDSSLVPSKNRDAQSLLPLTVKQIYDAVTLVGRVSNKTGRITDVTFVLDDGTGRIECSKWLHEAVDTNEAEAILDGMYARLHGQLKHFQRKRTLTVFSFRPVTDFNEIASHFSDCIYVHLYNSRLRSSVPNQQHSSPIPPTIVYQAQAVPPTNQFSDQHINGQKGVTVEAMVLDFLHHPTNRYFFKLFYLMLSICLLLAIKNLIDEGAVYETIGDHNKSIING 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00590 250 MobiDBLite consensus disorder prediction 13 36 - -
Gma17g00590 250 Gene3D - 35 151 IPR012340 -
Gma17g00590 250 SUPERFAMILY Nucleic acid-binding proteins 43 150 IPR012340 -
Gma17g00590 250 CDD RPA2_DBD_D 55 147 - -
Gma17g00590 250 Pfam OB-fold nucleic acid binding domain 55 126 IPR004365 GO:0003676
Gma17g00590 250 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 5 208 - -
Gma17g00590 250 PANTHER REPLICATION PROTEIN A-RELATED 5 208 IPR040260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00590 Gma-Chr17 4935394 4939641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00590 8 206 Core DNA Replication Machinery Family AT3G02920 46.188 1.01e-62 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00590 K10739 - gmx:100782819 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00590 17 4935394 4939641 Gma17g00590 17 4935394 4939641 ECH
Gma17g00590 17 4935394 4939641 Gma13g00774 13 21956898 21964018 GST