Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00588 ATGGCTACAGATTCGTCTTTTGAGGGCCTTGCACTTGATCCTTCTAAGTGCAGTAAATTGAGTATGGAAGAAAAAAGAGAACTTGTATATGAAGTATCTAAGTGGTCGCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGTCAAGAGATTTTGCAAATATTGTGTGCAGAAATGGGGAAAGAGAGAAAGTATACTGGGCTGACAAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGGAATGAAACTGCGACAGACCCTGAACCACAATCTTCTCCTGCACCTGGTCAGAAGCCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCACACGTGCCTGTTCCTGCGACCAGCATTACAGTCAATAATGGTGGTGATTCTGTTAACACCGCATACTGCAAAAACTCAGCTTGCAAAGCTACCCTGAATCAATCATATGCATTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGACAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCGGGAATTGCCAAGGATGGTGAGCATCCCAAGCTTGATGGAGGGTTCTACTGTGTCTCTTGCGGGAAAGTAAATGATTTACTTGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGCGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAAAGACTTTTACAAGGAACTGAAGTGTATGAAGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTCATTGGCTCACCGGTGAAGATTGGAAGGGGAATTGTGAACAGGCTTTCTTCTGGACCTGAGGTTCAGAAACTCTGTGGTTTTGCTCTGGAATCACTTGATTCACTACTTTCGAAAAGAATTTTGCCTTCGTCACCCAAGCCAACAACTCAAGATGCACATTTGCTGGCTCCAAATATGGTGAGGTTTGAAGACGTCACTGCCACAACCCTCACTATTATTTTGGGTTCTGAAGAACCCTCTGGTGAAATTATTGCTGGTTACACCTTGTGGCATCGCAAAGTTGATGATGTGGACTACCCCACCGACCCAACTTGCACCTCGCTCCTACCAAATAGAAGGTTCCGTGTCTCGGGTCTAATTCCAGGCACAGAATACAGTTTCAAAGTTGTTTCCAATGATTTGAGGGAGTCAGGTATGTGCGAAGTTCAAGTCTCAACAGAGCATGGCGAGGAAGAAGTCCCTAATTGCTCTGCAACAGAAAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCGTCATCAGTGGAAGATGAAACTAATAACTGTAATCCATATAGTGATCTGACTGATAACCGAGCAGACCATTATCCTTCTTATCACAAGGATAGCAACCAACTTGCTTCTGGAAATTTATCCAATGATGTTATTAACTGTTCCAATCTAGGCAGTGTGGGACTTCCTCCTGATGCAGATTCTTTGTCAGACAAGCAGCATGCTGGAGGAACGACTGCCTCCATACCTAGTTCTGATGTGCTAAAGCTCGAAAACAAGCATTCACCAGAGGAACAAGTCACTGAGGACATGAGCACTGATGATGGGTTGAATTCCCCAGCTCTAACAGGGAGGGAATGTGTGCCGTTAGTAGGTAGCTCAAAAGGAGGCTTGCCTAATACTCCCTGCAAGTTGGAAACACTTAAGGATGGACCTGGAAAGAATAAAAGATCTAAGTCGAGTGGCAAAGATCAAGAAAATGTATCCGGGAAAAGGGAGGGCCCCCAAGATGGAAGCACATCCAAGAAGAGAAGTGGAGAAAGGCAAGAGGAGGGCCGTGTTGCAAATGGCTTTTCGGATCGGGATTTTGAGTATTATGTGAAGGTAATTAGGTGGTTAGAGTGTGAAGGACACATAGAAAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACATCTCAAGAAGTAAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTGGACACCTTTTCAGAATGTATATCCAGCAAGAGAACATCAGTGGTGCCAGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2214 0.435 MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGNETATDPEPQSSPAPGQKPAKRQRKSENPSHVPVPATSITVNNGGDSVNTAYCKNSACKATLNQSYAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIAKDGEHPKLDGGFYCVSCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEVYEELYKIVDEAVKKLEPEVGPLIGSPVKIGRGIVNRLSSGPEVQKLCGFALESLDSLLSKRILPSSPKPTTQDAHLLAPNMVRFEDVTATTLTIILGSEEPSGEIIAGYTLWHRKVDDVDYPTDPTCTSLLPNRRFRVSGLIPGTEYSFKVVSNDLRESGMCEVQVSTEHGEEEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTDNRADHYPSYHKDSNQLASGNLSNDVINCSNLGSVGLPPDADSLSDKQHAGGTTASIPSSDVLKLENKHSPEEQVTEDMSTDDGLNSPALTGRECVPLVGSSKGGLPNTPCKLETLKDGPGKNKRSKSSGKDQENVSGKREGPQDGSTSKKRSGERQEEGRVANGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATSQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRTSVVPAGFCMKLWH 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00588 737 CDD FN3 346 420 IPR003961 GO:0005515
Gma17g00588 737 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Gma17g00588 737 MobiDBLite consensus disorder prediction 599 644 - -
Gma17g00588 737 MobiDBLite consensus disorder prediction 435 499 - -
Gma17g00588 737 MobiDBLite consensus disorder prediction 529 545 - -
Gma17g00588 737 SMART FN3_2 344 428 IPR003961 GO:0005515
Gma17g00588 737 MobiDBLite consensus disorder prediction 520 644 - -
Gma17g00588 737 SUPERFAMILY Fibronectin type III 346 421 IPR036116 GO:0005515
Gma17g00588 737 MobiDBLite consensus disorder prediction 86 129 - -
Gma17g00588 737 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 737 IPR044514 GO:0010048|GO:0040029
Gma17g00588 737 CDD PHD_VIN3_plant 161 226 - -
Gma17g00588 737 Pfam Fibronectin type III domain 346 420 IPR003961 GO:0005515
Gma17g00588 737 ProSiteProfiles Fibronectin type-III domain profile. 346 441 IPR003961 GO:0005515
Gma17g00588 737 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 737 - -
Gma17g00588 737 MobiDBLite consensus disorder prediction 440 481 - -
Gma17g00588 737 Gene3D Immunoglobulins 329 431 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00588 Gma-Chr17 4892928 4898573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00588 4 509 PHD Gene Family AT4G30200 53.160 1.01e-166 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00588 - - gmx:100794721 1508.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00588 17 4892928 4898573 Gma17g00588 17 4892928 4898573 ECH
Gma17g00588 17 4892928 4898573 Gma13g00777 13 22013923 22018056 GST