Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00586 ATGAGGTATATTCGGAGCAACAGCTTCAAGAGGTTCTTCTCATTCAGAAGACGCAGTTCAAGGGAACAGATTCTGAGTCCCAACAGTAAGGGTGAAGGAAACAATGAGATTCTTCCGCATGAAGAAGAACCTTCTCGAAGACCCTCTTGGAAGTGCTTCTCTTATGAAGAGTTGTTTGATGCCACCAATGGCTTCAGCTCAGAAAATTTGGTGGGAAAAGGAGGGTATGCAGAGGTTTACAAGGGAACAATGAATGGTGGTGAGGAAATTGCTGTGAAGAGACTCACAAGAACTTCGAGGGATGAGAGAAAGGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGTCATGTGAACCATTCCAACGTTTTACCTCTTTTGGGGTGTTGTATTGATAATGGTCTTTACCTTGTTTTTGAGCTATCTTCCAGAGGTTCTGTTGCATCTCTTATTCATGATGAAAAATTGCCTCCTCTAGATTGGAAAACGAGACATAAGATAGCTATTGGAACTGCACGTGGCCTTCACTACTTGCATAAGGATTGCAAGAGGAGGATAATCCACCGGGACATCAAGTCTTCAAACATTTTGTTAACAAAGGATTTTGAACCACAGATATCTGATTTTGGCCTAGCAAAATGGCTTCCATCTCAATGGACTCATCATTCAATTGGCCCTATAGAAGGGACATTTGGACATTTGGCCCCAGAGTACTACTTGCATGGTGTTGTGGATGAGAAGACAGATGTGTTTGCCTTTGGTGTGTTCATGCTAGAAGTAATCTCTGGCAGAAAACCAGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCTAAACCAATTTTGAACAAGGGTGAGATAGAAGAGTTGGTGGATCCAAGGCTTGAAGGGGCTTATGATGTGACACAGTTAAAGAGATTTGCCTTCGCTGCCTCTCTTTGCATTCGGGCATCTTCAACTTGGCGACCTACCATGAGTGAGGTATTAGAGATAATGGAGGAAGGAGAGACGGATATAGAGAAGTGGAAAATGCCAGAGGAAGAAGAAGAACAAGAGGAGGAGTTCTGGGGTTTTGAGGATCTGGAATATGAATATGACAGCTCCTTTTCAATGTCTTTACTTGACTCCATTGGAAGTACTTAA 1143 0.4278 MRYIRSNSFKRFFSFRRRSSREQILSPNSKGEGNNEILPHEEEPSRRPSWKCFSYEELFDATNGFSSENLVGKGGYAEVYKGTMNGGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSSRGSVASLIHDEKLPPLDWKTRHKIAIGTARGLHYLHKDCKRRIIHRDIKSSNILLTKDFEPQISDFGLAKWLPSQWTHHSIGPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFMLEVISGRKPVDGSHQSLHSWAKPILNKGEIEELVDPRLEGAYDVTQLKRFAFAASLCIRASSTWRPTMSEVLEIMEEGETDIEKWKMPEEEEEQEEEFWGFEDLEYEYDSSFSMSLLDSIGST 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00586 380 CDD STKc_IRAK 71 334 - -
Gma17g00586 380 Gene3D Phosphorylase Kinase; domain 1 36 141 - -
Gma17g00586 380 ProSiteProfiles Protein kinase domain profile. 65 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00586 380 Gene3D Transferase(Phosphotransferase) domain 1 143 357 - -
Gma17g00586 380 SUPERFAMILY Protein kinase-like (PK-like) 41 332 IPR011009 -
Gma17g00586 380 PANTHER OS08G0249100 PROTEIN 17 362 - -
Gma17g00586 380 Pfam Protein tyrosine and serine/threonine kinase 68 273 IPR001245 GO:0004672|GO:0006468
Gma17g00586 380 PANTHER OS04G0654600 PROTEIN 17 362 - -
Gma17g00586 380 MobiDBLite consensus disorder prediction 23 46 - -
Gma17g00586 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Gma17g00586 380 SMART serkin_6 65 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00586 380 ProSitePatterns Protein kinases ATP-binding region signature. 71 93 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00586 Gma-Chr17 4871804 4877237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00586 53 333 Trihelix Transcription Factor Family AT1G70460 44.828 3.85e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gma17g00586 PK_Tyr_Ser-Thr 4.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00586 - - gmx:100305398 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00586 17 4871804 4877237 Gma17g00586 17 4871804 4877237 ECH
Gma17g00586 17 4871804 4877237 Gma13g00779 13 22036746 22041390 GST
Gma17g00586 17 4871804 4877237 Gma15g01501 15 13929312 13935540 PCT
Gma17g00586 17 4871804 4877237 Gma09g00496 09 5045570 5050938 PCT
Gma15g01501 15 13929312 13935540 Gma17g00586 17 4871804 4877237 PCT
Gma09g00496 09 5045570 5050938 Gma17g00586 17 4871804 4877237 PCT