Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00559 ATGCGGGATAGTGAGAAGAAGTTAAACAAAAAAGGATCTAAAAAATCCAGTCCTTTGAAGGTGCGTAAGAAGGGCCAAGGGAAGAAGGAAAAAGTGAAAGTGGGATCAAAATCTCACACAAAAAATGCTGGCACTGATATATCAAGGAAGAGAGTTATCTCTTCTCTCAAGGTCAAAGGGCCACCTAAGGATTCTTCAGATAAGAAATTGATTATTGGAAAAAAATTGCCTATCAAGAACAAAAAATCTTCACTGAAGCCATCCTCAAAGTTACAAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGGGAGATGCTGATGGGGCGGTAAAGCTTCCCAAAATGAAGAGGAAGAGAAAGAAGAAAAGGCAAAGGAATAATGTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAACGAGGTATCTTTTAATTAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAAGCCAGAAAAGGAGCTTCAAAGAGCAAGGAAGCAGATTTTAAAATGTAGACTTGGTATTCGTGATGTCATTCGCCAGTTGGATTCTCTTGGTTCACTGAGTAGCATTGAAGATTCTGCCATTGCTCCAGATGGATCTGTTTACCATGAACATATATTCTGTGTAAAGTGCACTGTGCGTGAAGAGCTTCCAGATAATGATATTATACTATGCAATGGTACATGCAAGCGTGCTTTTCACCAAAAATGTCTAGATCCTCCTTTGGACACTGAAAATATTCCTCCTGGAGAGCAGGGCTGGTTTTGTAAATTTTGTGAATGTAAAATGGAAATACTGGAGGCAACGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTACTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATACCTGATGGTGAGACTGCATTACTGAATCCTGAAGAAGAATGGCCATCTGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATCAACACAGAAGGAGCAAATGATAGTGCATCTGAGGACTTAACCAGTTCTACCAGTCTGTGTTCTTCTGATGGTGAATCTTCTCCAGTAGATGGTGTCAGTCATGAATATTTTTCTGTCAAAAGCAGCATAGATTCTGATGAGTCTGAGGACAAAGCCTGTGGCTGTAGGCAGCGAAAAGCCGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTGATTCTCTTATGACTTTGCATGAAAGTGAGAATATGCACCCCAATAATGAGCACCTCGACATGACAAGAAAAAATTCTTCAAGCATAAAAATCAAAAGGCATTGTTTTAGGATTCCACATGATGCAGTTGAGAAGCTTCGCCAAGTGTTTGCTGAGAACGAACTTCCTCCAAGATCTATAAGAGAGGGTCTTTCAAAAGAGCTGGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAAACAGAAAGTATCAAGCAGAAGGAGGAGCAGATCAGCTTCAGAGTATCACTTCTACAAAGAACTCCAGATTACAAAATCAGGAGATTTTCGATCTTCTGAAATCAAAGACCTCTAAAATTACTATGACACATTTCCAGAAGGATGTTAAAAATGTCAATGGAAGAAAGAAAACAAAGTCATCTAACAAGAAAAGACAACCAGAAATTCCTCCACCTCCAGGAGAAAATGGCAACATGGACTTTATGGAGATCAGTGATGATGTGAGCTTGAAGAAACTGTTAAAGAAAAGAAAGAAGAGGTTGATAAGTTTTACATTTGAAGGAGACTCTCAGGCGGCAGAGTTGGAATTTGAAAGGCTAAGCAAATTGAAGACTAAAGTAGATAGTATGAAGCAAAAATTAACTGCAATTCAAAATTCCAGAGTTAAGGATTCAAATGAACCCCATTCTAGTGAACCATCCATTGTATATGTACCCACAGCAGTGTTACGGGAAAAGGTTGAATGA 2112 0.3977 MRDSEKKLNKKGSKKSSPLKVRKKGQGKKEKVKVGSKSHTKNAGTDISRKRVISSLKVKGPPKDSSDKKLIIGKKLPIKNKKSSLKPSSKLQGKKASLSSRKEGGDADGAVKLPKMKRKRKKKRQRNNVDLDDPSRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRARKQILKCRLGIRDVIRQLDSLGSLSSIEDSAIAPDGSVYHEHIFCVKCTVREELPDNDIILCNGTCKRAFHQKCLDPPLDTENIPPGEQGWFCKFCECKMEILEATNAHLGTHFSLHSTWQDVFKEEAAIPDGETALLNPEEEWPSDDSEDDDYDPERKEDSHNINTEGANDSASEDLTSSTSLCSSDGESSPVDGVSHEYFSVKSSIDSDESEDKACGCRQRKAVDYKKLYDEMFGKDAPAYEQLSEDEDWGPGKRKRREKESDAVDSLMTLHESENMHPNNEHLDMTRKNSSSIKIKRHCFRIPHDAVEKLRQVFAENELPPRSIREGLSKELGLDTEKVSKWFKNARYLALKNRKYQAEGGADQLQSITSTKNSRLQNQEIFDLLKSKTSKITMTHFQKDVKNVNGRKKTKSSNKKRQPEIPPPPGENGNMDFMEISDDVSLKKLLKKRKKRLISFTFEGDSQAAELEFERLSKLKTKVDSMKQKLTAIQNSRVKDSNEPHSSEPSIVYVPTAVLREKVE 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00559 703 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 679 - -
Gma17g00559 703 SMART HOX_1 478 540 IPR001356 GO:0003677
Gma17g00559 703 MobiDBLite consensus disorder prediction 1 134 - -
Gma17g00559 703 ProSitePatterns Zinc finger PHD-type signature. 225 276 IPR019786 -
Gma17g00559 703 SMART PHD_3 224 277 IPR001965 -
Gma17g00559 703 MobiDBLite consensus disorder prediction 419 446 - -
Gma17g00559 703 MobiDBLite consensus disorder prediction 13 30 - -
Gma17g00559 703 Gene3D - 472 539 - -
Gma17g00559 703 SUPERFAMILY FYVE/PHD zinc finger 216 282 IPR011011 -
Gma17g00559 703 MobiDBLite consensus disorder prediction 582 616 - -
Gma17g00559 703 PANTHER POLYCOMB PROTEIN PCL 1 679 - -
Gma17g00559 703 ProSiteProfiles Zinc finger PHD-type profile. 222 279 IPR019787 -
Gma17g00559 703 MobiDBLite consensus disorder prediction 96 113 - -
Gma17g00559 703 SUPERFAMILY Homeodomain-like 472 535 IPR009057 -
Gma17g00559 703 Coils Coil 655 675 - -
Gma17g00559 703 MobiDBLite consensus disorder prediction 347 373 - -
Gma17g00559 703 CDD homeodomain 477 531 IPR001356 GO:0003677
Gma17g00559 703 MobiDBLite consensus disorder prediction 316 377 - -
Gma17g00559 703 Pfam Homeodomain 487 531 IPR001356 GO:0003677
Gma17g00559 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 273 IPR013083 -
Gma17g00559 703 MobiDBLite consensus disorder prediction 321 335 - -
Gma17g00559 703 Pfam PHD-finger 224 279 IPR019787 -
Gma17g00559 703 CDD PHD_PRHA_like 224 276 IPR045876 -
Gma17g00559 703 ProSiteProfiles 'Homeobox' domain profile. 476 536 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00559 Gma-Chr17 4598883 4603247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00559 127 541 Homeobox Transcription Factor Family AT4G29940 57.176 3.14e-156 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gma17g00559 Homeodomain 8.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00559 - - gmx:100817639 1267.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00559 17 4598883 4603247 Gma17g00559 17 4598883 4603247 ECH
Gma17g00559 17 4598883 4603247 Gma13g00807 13 22370006 22374464 GST
Gma17g00559 17 4598883 4603247 Gma15g01547 15 14630280 14650538 PCT
Gma17g00559 17 4598883 4603247 Gma09g00541 09 5650464 5657183 PCT
Gma15g01547 15 14630280 14650538 Gma17g00559 17 4598883 4603247 PCT
Gma09g00541 09 5650464 5657183 Gma17g00559 17 4598883 4603247 PCT