Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00557 ATGCTATCGCTAATGAAACTCGACTCCCTTTTTATTCCATTTCAGTTACCCAAGTGGTCTCTGGATTCTCAGCTAGGTGAATCTCAAGAAAATATTAGAGACCTTTTCTCTAAAGCATACAGGACTGCTCCATCGATCATATTTATTGATGAGGTTGATGCAATTGCTTTGAAAAGAGAGAATCTATCACAGATGGAGCTACTAATAGGCCCCATGCCATTGACCCCGCCCTTAGAAGACCTGGAATATTTGATTGGTCCGACTGATCTACCTAAGATAGCTAAATCTACAAAAGCATTTACTGGCTCTGATTTGAAAAGTTTGATCGAGCATGCTGGTAAATTGGCGATGAGGAGAATAACATATCCAGAGGACTGCTTTAGGGAACCTTTCTTGCCAGAAGAAGTGGACAAGGCTGCCATCAAAATGTCTGATTTGGAGGGTCTTGGGATGGATCTTACGACAAGATTTTTGCTTTATGGACCTCCAGGTTGTGGAAAAACACTGATTGCCAAAGCTGTTGCCAATGCTGCAGTTGCTAATCCATATGTTGGAGTAAGTGAGCAAAAAGTTCGGGCAATGTTCAACGATGCAAAGGCATGTGGATGGGTTACTGAACGATTATTGAACCAGTTGCTTATTGAGTTAGATGGCGCAGATCAACAGCAACAAATAGGTACATCTTGTTCACCTGACGTAATTGATCCTGCTCTTTTACGGCCTGGCAGGTTTAGTAGACTTCTTTACATTCCTCTCCCAAATCCAGGCCAGCGGGTTTTAATATTGAAAGCTCTTTCAAGAAAGTATCGTGTTGACGCCAGTACGGATTTTAGTGCCATAGGAAGATCGGAAGCTTGTGAAAATATGAGTGGTGCCGATCTTGATTTATTGATGGAAGAAGCTGCAATGACTTTTGTTAAAGGGAATGGGGCCTCAAATGATGTGGTTGCAGTGATGTGGCGGTGGTGCGGTGTAGTTGATTGTCGTTGTGATGTGGTGGCTCATCGATGTTGTGTGGTGGGTCGTCGGTGCAGTGTTCCTCCACGCGGGGATGCTAGTGTCGTACCCAGGGATGTTGTCATACCCTTAAATTACATCATATAA 1104 0.4348 MLSLMKLDSLFIPFQLPKWSLDSQLGESQENIRDLFSKAYRTAPSIIFIDEVDAIALKRENLSQMELLIGPMPLTPPLEDLEYLIGPTDLPKIAKSTKAFTGSDLKSLIEHAGKLAMRRITYPEDCFREPFLPEEVDKAAIKMSDLEGLGMDLTTRFLLYGPPGCGKTLIAKAVANAAVANPYVGVSEQKVRAMFNDAKACGWVTERLLNQLLIELDGADQQQQIGTSCSPDVIDPALLRPGRFSRLLYIPLPNPGQRVLILKALSRKYRVDASTDFSAIGRSEACENMSGADLDLLMEEAAMTFVKGNGASNDVVAVMWRWCGVVDCRCDVVAHRCCVVGRRCSVPPRGDASVVPRDVVIPLNYII 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00557 367 Gene3D - 65 147 - -
Gma17g00557 367 PANTHER AAA-FAMILY ATPASE 88 307 - -
Gma17g00557 367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 305 IPR027417 -
Gma17g00557 367 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 88 307 - -
Gma17g00557 367 SMART AAA_5 153 254 IPR003593 -
Gma17g00557 367 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 23 64 - -
Gma17g00557 367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 139 IPR027417 -
Gma17g00557 367 Gene3D - 204 252 IPR027417 -
Gma17g00557 367 Gene3D - 21 62 IPR027417 -
Gma17g00557 367 Gene3D - 253 308 - -
Gma17g00557 367 Gene3D - 155 200 IPR027417 -
Gma17g00557 367 CDD AAA 157 252 - -
Gma17g00557 367 Pfam ATPase family associated with various cellular activities (AAA) 205 252 IPR003959 GO:0005524|GO:0016887
Gma17g00557 367 Pfam ATPase family associated with various cellular activities (AAA) 16 60 IPR003959 GO:0005524|GO:0016887
Gma17g00557 367 Pfam ATPase family associated with various cellular activities (AAA) 158 199 IPR003959 GO:0005524|GO:0016887
Gma17g00557 367 Pfam AAA+ lid domain 89 135 IPR041569 -
Gma17g00557 367 PANTHER AAA-FAMILY ATPASE 23 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00557 Gma-Chr17 4590772 4595631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00557 157 303 Calmodulin-binding Proteins AT3G56690 36.957 1.64e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00557 K14571 - zju:107431316 238.039